Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs151247	0.90[ASN][1000 genomes]
rs151248	0.87[ASN][1000 genomes]
rs151249	0.89[ASN][1000 genomes]
rs151250	0.86[ASN][1000 genomes]
rs163056	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs163057	0.93[ASN][1000 genomes]
rs163221	0.86[ASN][1000 genomes]
rs163222	0.86[ASN][1000 genomes]
rs163223	0.86[ASN][1000 genomes]
rs163224	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs163225	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs163227	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs163228	0.89[ASN][1000 genomes]
rs180147	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs190166	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs232324	0.90[ASN][1000 genomes]
rs232325	0.89[ASN][1000 genomes]
rs232327	0.87[ASN][1000 genomes]
rs232328	0.84[ASN][1000 genomes]
rs232329	0.87[ASN][1000 genomes]
rs232330	0.88[ASN][1000 genomes]
rs232331	0.88[ASN][1000 genomes]
rs232332	0.88[ASN][1000 genomes]
rs232333	0.88[ASN][1000 genomes]
rs232334	0.86[ASN][1000 genomes]
rs232335	0.88[ASN][1000 genomes]
rs232336	0.84[ASN][1000 genomes]
rs232338	0.88[ASN][1000 genomes]
rs232340	0.86[ASN][1000 genomes]
rs232341	0.86[ASN][1000 genomes]
rs232342	0.85[ASN][1000 genomes]
rs232343	0.86[ASN][1000 genomes]
rs232344	0.86[ASN][1000 genomes]
rs232346	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs232319	SS18	cis	cerebellum	SCAN
rs232319	C18orf16	cis	parietal	SCAN
rs232319	ABHD3	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24488400-24501200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:24499200-24500200	Enhancers	Adipose Nuclei	Adipose
3	chr18:24499400-24500200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr18:24499600-24500200	Enhancers	Colon Smooth Muscle	Colon
5	chr18:24499600-24500200	Enhancers	Fetal Lung	lung
6	chr18:24499600-24500400	Enhancers	Fetal Muscle Leg	muscle
7	chr18:24499600-24501600	Enhancers	Liver	Liver
8	chr18:24499800-24500200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr18:24499800-24500200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr18:24499800-24500200	Enhancers	Ovary	ovary
11	chr18:24499800-24500400	Enhancers	Fetal Intestine Small	intestine
12	chr18:24499800-24501400	Enhancers	HepG2	liver
13	chr18:24500000-24500200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr18:24500000-24500400	Enhancers	Fetal Heart	heart
15	chr18:24500000-24501000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr18:24500000-24503800	Weak transcription	Gastric	stomach
17	chr18:24500000-24506600	Weak transcription	Brain Substantia Nigra	brain

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