Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs151247	0.87[AMR][1000 genomes]
rs151248	0.87[AMR][1000 genomes]
rs151249	0.87[AMR][1000 genomes]
rs151250	0.87[AMR][1000 genomes]
rs163221	0.87[AMR][1000 genomes]
rs163222	0.87[AMR][1000 genomes]
rs163223	0.87[AMR][1000 genomes]
rs163227	0.81[AMR][1000 genomes]
rs163228	0.87[AMR][1000 genomes]
rs170802	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs232324	0.87[AMR][1000 genomes]
rs232325	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs232327	0.83[AMR][1000 genomes]
rs232328	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs232329	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs232330	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs232331	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs232332	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs232333	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs232334	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs232335	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs232336	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs232338	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs232340	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs232341	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs232342	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs232343	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs232344	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv962502	chr18:24504514-24513317	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24503200-24520800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr18:24504000-24518600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr18:24504800-24509200	Enhancers	Fetal Lung	lung
4	chr18:24505000-24509800	Weak transcription	Gastric	stomach
5	chr18:24505000-24509800	Weak transcription	Pancreas	Pancrea
6	chr18:24505400-24527200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr18:24505600-24508600	Weak transcription	Ovary	ovary
8	chr18:24506600-24509000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr18:24507000-24508600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr18:24507000-24508600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr18:24507000-24508800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr18:24507000-24509000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr18:24507000-24509000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr18:24507000-24509200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr18:24507200-24508400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr18:24507400-24508800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr18:24507400-24509000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr18:24507600-24508400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr18:24507600-24508600	Weak transcription	Fetal Stomach	stomach
20	chr18:24507800-24508800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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