Variant report

Variant	rs2325780
Chromosome Location	chr8:58431357-58431358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10504234	0.91[ASN][1000 genomes]
rs12155651	0.86[ASN][1000 genomes]
rs1545453	0.86[ASN][1000 genomes]
rs16922257	0.86[ASN][1000 genomes]
rs2084677	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28453976	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34007196	0.96[ASN][1000 genomes]
rs55799021	0.86[ASN][1000 genomes]
rs55823109	0.93[ASN][1000 genomes]
rs55823908	0.92[ASN][1000 genomes]
rs55906074	0.93[ASN][1000 genomes]
rs55917197	0.91[ASN][1000 genomes]
rs55980557	0.85[ASN][1000 genomes]
rs56351178	1.00[ASN][1000 genomes]
rs56372944	0.92[ASN][1000 genomes]
rs58093663	0.84[ASN][1000 genomes]
rs58671463	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59467808	1.00[ASN][1000 genomes]
rs61530179	0.86[ASN][1000 genomes]
rs62512294	0.85[ASN][1000 genomes]
rs62512295	0.86[ASN][1000 genomes]
rs62512333	0.86[ASN][1000 genomes]
rs62512334	0.86[ASN][1000 genomes]
rs62512341	0.93[ASN][1000 genomes]
rs62512342	0.93[ASN][1000 genomes]
rs62512343	0.96[ASN][1000 genomes]
rs62512345	0.96[ASN][1000 genomes]
rs62512346	0.96[ASN][1000 genomes]
rs62512347	1.00[ASN][1000 genomes]
rs62512348	1.00[ASN][1000 genomes]
rs62514274	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62514275	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514278	0.84[ASN][1000 genomes]
rs6471623	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471624	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009201	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014326	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7828768	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7832573	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758161	chr8:57930392-58474449	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759618	chr8:57930392-58474449	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv518178	chr8:58328635-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv831322	chr8:58389416-58551242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1015600	chr8:58400271-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1018174	chr8:58404809-58548970	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1032984	chr8:58406263-58548970	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1018076	chr8:58408947-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58426200-58432600	Weak transcription	A549	lung
2	chr8:58426400-58431400	Weak transcription	Osteobl	bone
3	chr8:58426400-58431800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:58427000-58431600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:58427000-58431800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:58427000-58432800	Weak transcription	NHLF	lung
7	chr8:58427000-58433000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:58427400-58432400	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:58428400-58431600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:58430600-58433400	Enhancers	HSMM	muscle
11	chr8:58431200-58431600	Enhancers	HSMMtube	muscle
12	chr8:58431200-58431800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:58431200-58433200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:58431200-58433200	Enhancers	NH-A	brain
15	chr8:58431200-58433200	Enhancers	NHDF-Ad	bronchial
16	chr8:58431200-58433400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:58431200-58433400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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