Variant report

Variant	rs2326225
Chromosome Location	chr3:85177173-85177174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11719276	0.87[ASN][1000 genomes]
rs12632038	0.86[EUR][1000 genomes]
rs12638015	0.86[TSI][hapmap]
rs12714616	1.00[CHB][hapmap]
rs12714617	1.00[CHB][hapmap]
rs13061527	0.81[MEX][hapmap]
rs13066623	1.00[CHB][hapmap]
rs13078384	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs13095644	0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs13097560	0.80[MEX][hapmap]
rs1545926	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1551213	0.86[TSI][hapmap]
rs2171141	0.85[MEX][hapmap]
rs2220244	0.95[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4411894	0.91[EUR][1000 genomes]
rs4516626	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.83[MKK][hapmap];0.93[ASN][1000 genomes]
rs6549016	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6775752	0.81[MEX][hapmap]
rs6808586	0.86[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7630382	0.86[ASW][hapmap];0.81[MEX][hapmap];0.83[MKK][hapmap]
rs9647393	1.00[CHB][hapmap]
rs9815258	1.00[CHB][hapmap]
rs9817509	0.86[TSI][hapmap]
rs9818659	1.00[CHB][hapmap]
rs9821807	1.00[CHB][hapmap]
rs9823454	1.00[CHB][hapmap]
rs9828496	1.00[CHB][hapmap]
rs9831374	0.87[ASN][1000 genomes]
rs9835904	0.88[JPT][hapmap]
rs9838091	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9846802	0.93[ASN][1000 genomes]
rs9848082	0.82[CEU][hapmap]
rs9860513	1.00[CHB][hapmap]
rs9873321	0.92[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9875381	0.81[MEX][hapmap]
rs9880397	0.81[ASN][1000 genomes]
rs9881257	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv590898	chr3:85158733-85243777	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv877095	chr3:85163167-85290434	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv877096	chr3:85163167-85366517	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv460747	chr3:85163167-85391672	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv590899	chr3:85163167-85391672	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1001124	chr3:85167047-85309046	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv590900	chr3:85177049-85265011	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv877097	chr3:85177173-85290434	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv877098	chr3:85177173-85361645	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2326225	CADM2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85168400-85177600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85169200-85198600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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