Variant report

Variant	rs2328674
Chromosome Location	chr6:56128591-56128592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1925161	0.90[AFR][1000 genomes]
rs4374815	0.90[AFR][1000 genomes]
rs4388289	0.90[AFR][1000 genomes]
rs6933768	0.89[AFR][1000 genomes]
rs9370502	0.89[AFR][1000 genomes]
rs9370521	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56120800-56129800	Weak transcription	Aorta	Aorta
2	chr6:56127000-56130000	Enhancers	Fetal Stomach	stomach
3	chr6:56127600-56129400	Enhancers	Fetal Lung	lung
4	chr6:56127800-56129200	Enhancers	HSMM	muscle
5	chr6:56128200-56129200	Enhancers	NHDF-Ad	bronchial
6	chr6:56128400-56129000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:56128400-56129000	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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