The 2.0 version of rSNPBase

Variant report

Variant rs233047
Chromosome Location chr1:85830570-85830571
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85809200-85838400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:85814200-85839600 Weak transcription Left Ventricle heart
3 chr1:85816000-85831400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr1:85816000-85839600 Weak transcription Pancreas Pancrea
5 chr1:85816600-85836800 Weak transcription Fetal Muscle Trunk muscle
6 chr1:85823200-85836800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr1:85824400-85833800 Weak transcription Fetal Intestine Small intestine
8 chr1:85825000-85839000 Weak transcription Aorta Aorta
9 chr1:85826200-85832000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr1:85826200-85838800 Weak transcription Hela-S3 cervix
11 chr1:85826400-85831200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr1:85826800-85831000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr1:85827000-85833800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:85827000-85834600 Enhancers NHDF-Ad bronchial
15 chr1:85827000-85837800 Weak transcription Rectal Smooth Muscle rectum
16 chr1:85827200-85831400 Weak transcription Ovary ovary
17 chr1:85827200-85831400 Weak transcription HUVEC blood vessel
18 chr1:85827200-85832200 Weak transcription HMEC breast
19 chr1:85827200-85836800 Weak transcription Adipose Nuclei Adipose
20 chr1:85827200-85839000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:85827400-85839400 Weak transcription Fetal Intestine Large intestine
22 chr1:85827600-85831200 Weak transcription Small Intestine intestine
23 chr1:85827600-85831600 Weak transcription NH-A brain
24 chr1:85827600-85836800 Weak transcription HepG2 liver
25 chr1:85827800-85832000 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr1:85828000-85838800 Weak transcription Colon Smooth Muscle Colon
27 chr1:85828400-85831600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr1:85829400-85831800 Weak transcription A549 lung
29 chr1:85829400-85832600 Weak transcription Fetal Muscle Leg muscle
30 chr1:85829400-85836800 Weak transcription Brain Anterior Caudate brain
31 chr1:85829400-85838400 Weak transcription Fetal Kidney kidney
32 chr1:85829600-85830800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:85829600-85831600 Weak transcription HSMMtube muscle
34 chr1:85829600-85831600 Weak transcription NHLF lung
35 chr1:85829600-85832600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:85829600-85832600 Weak transcription Cortex derived primary cultured neurospheres brain
37 chr1:85829600-85839000 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr1:85829800-85831000 Weak transcription Liver Liver
39 chr1:85829800-85833200 Weak transcription Fetal Stomach stomach
40 chr1:85830000-85831000 Weak transcription Muscle Satellite Cultured Cells --
41 chr1:85830000-85831800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr1:85830000-85835600 Weak transcription Psoas Muscle Psoas
43 chr1:85830200-85830600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr1:85830200-85832400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:85830400-85830600 Genic enhancers HSMM muscle
46 chr1:85830400-85833600 Genic enhancers Osteobl bone

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Last update: Aug 31, 2015