The 2.0 version of rSNPBase

Variant report

Variant rs233114
Chromosome Location chr1:85786957-85786958
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85774600-85787000 Weak transcription Fetal Stomach stomach
2 chr1:85774600-85794800 Weak transcription Spleen Spleen
3 chr1:85774800-85790400 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr1:85774800-85790600 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr1:85774800-85794200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr1:85778200-85790400 Weak transcription H9 Cell Line embryonic stem cell
7 chr1:85778800-85788800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr1:85778800-85789600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:85779600-85787400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:85780000-85791800 Weak transcription ES-WA7 Cell Line embryonic stem cell
11 chr1:85780000-85795800 Weak transcription Rectal Smooth Muscle rectum
12 chr1:85780200-85790400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr1:85780200-85795800 Weak transcription Stomach Smooth Muscle stomach
14 chr1:85780400-85788200 Weak transcription Fetal Muscle Trunk muscle
15 chr1:85780400-85791600 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr1:85780400-85793200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:85780400-85795800 Weak transcription Gastric stomach
18 chr1:85780800-85787600 Weak transcription Fetal Muscle Leg muscle
19 chr1:85781800-85792800 Weak transcription Pancreas Pancrea
20 chr1:85782200-85790600 Genic enhancers Muscle Satellite Cultured Cells --
21 chr1:85782400-85795000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr1:85782800-85794600 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr1:85783000-85795800 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr1:85783200-85795800 Weak transcription Aorta Aorta
25 chr1:85783800-85789800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr1:85783800-85791000 Genic enhancers Osteobl bone
27 chr1:85784000-85789600 Strong transcription HepG2 liver
28 chr1:85784000-85790400 Weak transcription Left Ventricle heart
29 chr1:85784000-85794600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:85784600-85794600 Weak transcription Fetal Lung lung
31 chr1:85784800-85787200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:85784800-85789400 Genic enhancers HSMM muscle
33 chr1:85785200-85788600 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:85785200-85789400 Strong transcription Liver Liver
35 chr1:85785600-85787400 Enhancers Placenta Amnion Placenta Amnion
36 chr1:85785600-85787400 Enhancers Hela-S3 cervix
37 chr1:85785600-85787600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr1:85785600-85787800 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:85785600-85788800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:85785600-85788800 Enhancers HMEC breast
41 chr1:85785800-85787800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:85785800-85789400 Genic enhancers NHDF-Ad bronchial
43 chr1:85785800-85789600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr1:85785800-85789800 Strong transcription Fetal Intestine Large intestine
45 chr1:85786200-85787200 Enhancers HSMMtube muscle
46 chr1:85786200-85789400 Strong transcription Cortex derived primary cultured neurospheres brain
47 chr1:85786200-85790400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
48 chr1:85786400-85787200 Enhancers Breast Myoepithelial Primary Cells Breast
49 chr1:85786400-85787200 Weak transcription Duodenum Mucosa Duodenum
50 chr1:85786400-85787200 Enhancers Lung lung

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Last update: Aug 31, 2015