The 2.0 version of rSNPBase

Variant report

Variant rs233120
Chromosome Location chr1:85788490-85788491
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85774600-85794800 Weak transcription Spleen Spleen
2 chr1:85774800-85790400 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr1:85774800-85790600 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr1:85774800-85794200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:85778200-85790400 Weak transcription H9 Cell Line embryonic stem cell
6 chr1:85778800-85788800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:85778800-85789600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:85780000-85791800 Weak transcription ES-WA7 Cell Line embryonic stem cell
9 chr1:85780000-85795800 Weak transcription Rectal Smooth Muscle rectum
10 chr1:85780200-85790400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr1:85780200-85795800 Weak transcription Stomach Smooth Muscle stomach
12 chr1:85780400-85791600 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr1:85780400-85793200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr1:85780400-85795800 Weak transcription Gastric stomach
15 chr1:85781800-85792800 Weak transcription Pancreas Pancrea
16 chr1:85782200-85790600 Genic enhancers Muscle Satellite Cultured Cells --
17 chr1:85782400-85795000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr1:85782800-85794600 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr1:85783000-85795800 Weak transcription Rectal Mucosa Donor 29 rectum
20 chr1:85783200-85795800 Weak transcription Aorta Aorta
21 chr1:85783800-85789800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr1:85783800-85791000 Genic enhancers Osteobl bone
23 chr1:85784000-85789600 Strong transcription HepG2 liver
24 chr1:85784000-85790400 Weak transcription Left Ventricle heart
25 chr1:85784000-85794600 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:85784600-85794600 Weak transcription Fetal Lung lung
27 chr1:85784800-85789400 Genic enhancers HSMM muscle
28 chr1:85785200-85788600 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:85785200-85789400 Strong transcription Liver Liver
30 chr1:85785600-85788800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:85785600-85788800 Enhancers HMEC breast
32 chr1:85785800-85789400 Genic enhancers NHDF-Ad bronchial
33 chr1:85785800-85789600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr1:85785800-85789800 Strong transcription Fetal Intestine Large intestine
35 chr1:85786200-85789400 Strong transcription Cortex derived primary cultured neurospheres brain
36 chr1:85786200-85790400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
37 chr1:85786400-85791200 Strong transcription Fetal Intestine Small intestine
38 chr1:85786600-85788600 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:85786600-85788600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:85786600-85788800 Enhancers A549 lung
41 chr1:85786600-85789000 Enhancers HUVEC blood vessel
42 chr1:85786600-85789200 Weak transcription Right Ventricle heart
43 chr1:85786600-85789200 Enhancers NHLF lung
44 chr1:85786600-85789400 Enhancers NH-A brain
45 chr1:85786600-85790000 Weak transcription Fetal Heart heart
46 chr1:85786600-85790400 Weak transcription HUES6 Cell Line embryonic stem cell
47 chr1:85786600-85790600 Weak transcription HUES64 Cell Line embryonic stem cell
48 chr1:85786600-85791400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr1:85786600-85791600 Weak transcription Fetal Kidney kidney
50 chr1:85786800-85790400 Weak transcription ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015