The 2.0 version of rSNPBase

Variant report

Variant rs233129
Chromosome Location chr1:85794940-85794941
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85780000-85795800 Weak transcription Rectal Smooth Muscle rectum
2 chr1:85780200-85795800 Weak transcription Stomach Smooth Muscle stomach
3 chr1:85780400-85795800 Weak transcription Gastric stomach
4 chr1:85782400-85795000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:85783000-85795800 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr1:85783200-85795800 Weak transcription Aorta Aorta
7 chr1:85788600-85797400 Weak transcription Fetal Muscle Trunk muscle
8 chr1:85789400-85795800 Weak transcription Liver Liver
9 chr1:85789800-85795800 Weak transcription Fetal Stomach stomach
10 chr1:85789800-85795800 Weak transcription Lung lung
11 chr1:85790000-85795600 Enhancers NHDF-Ad bronchial
12 chr1:85790200-85795200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
13 chr1:85790400-85795600 Weak transcription Brain Germinal Matrix brain
14 chr1:85790400-85796200 Enhancers ES-I3 Cell Line embryonic stem cell
15 chr1:85790400-85797000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr1:85790600-85800000 Enhancers HUVEC blood vessel
17 chr1:85791000-85796800 Enhancers HepG2 liver
18 chr1:85791200-85798000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr1:85791400-85797400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:85792000-85795400 Weak transcription Placenta Amnion Placenta Amnion
21 chr1:85792000-85795800 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr1:85792200-85795600 Weak transcription ES-WA7 Cell Line embryonic stem cell
23 chr1:85792200-85796400 Weak transcription Duodenum Mucosa Duodenum
24 chr1:85792200-85806000 Weak transcription Fetal Kidney kidney
25 chr1:85792400-85796200 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr1:85792600-85795600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:85792600-85797800 Weak transcription Fetal Intestine Small intestine
28 chr1:85792800-85796600 Enhancers HUES48 Cell Line embryonic stem cell
29 chr1:85793000-85797000 Enhancers HMEC breast
30 chr1:85793200-85797000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:85793200-85797600 Enhancers NHEK skin
32 chr1:85793200-85798600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr1:85793400-85795000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
34 chr1:85793400-85797600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:85793600-85795800 Enhancers Muscle Satellite Cultured Cells --
36 chr1:85793600-85795800 Weak transcription Colon Smooth Muscle Colon
37 chr1:85793600-85798200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:85793800-85795800 Enhancers NHLF lung
39 chr1:85794000-85795200 Enhancers Left Ventricle heart
40 chr1:85794000-85795200 Enhancers Right Atrium heart
41 chr1:85794000-85796600 Enhancers iPS-20b Cell Line embryonic stem cell
42 chr1:85794000-85797000 Enhancers HUES6 Cell Line embryonic stem cell
43 chr1:85794000-85798200 Enhancers Breast Myoepithelial Primary Cells Breast
44 chr1:85794200-85795000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:85794200-85795000 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
46 chr1:85794200-85795000 Enhancers Esophagus oesophagus
47 chr1:85794200-85795200 Enhancers H9 Cell Line embryonic stem cell
48 chr1:85794200-85795600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr1:85794200-85795600 Enhancers NH-A brain
50 chr1:85794200-85795800 Enhancers HSMM muscle

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Last update: Aug 31, 2015