Variant report

Variant	rs2332701
Chromosome Location	chr14:72430459-72430460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10147777	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11846754	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11850532	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17104975	0.87[ASN][1000 genomes]
rs17104979	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105032	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17105061	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1860105	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1989628	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2190872	0.99[ASN][1000 genomes]
rs2238274	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2238275	0.89[ASN][1000 genomes]
rs2238276	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2238278	0.99[ASN][1000 genomes]
rs2238283	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2238285	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2239270	0.83[EUR][1000 genomes]
rs23219	0.82[ASN][1000 genomes]
rs36327	0.82[ASN][1000 genomes]
rs4902960	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4902965	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56731686	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58002698	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59307289	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60545259	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs720391	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs764624	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72425600-72430800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72425600-72431200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72426800-72437200	Weak transcription	Left Ventricle	heart
4	chr14:72430400-72431800	Weak transcription	GM12878-XiMat	blood
5	chr14:72430400-72435800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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