Variant report

Variant	rs2340936
Chromosome Location	chr14:55661241-55661242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10129505	0.81[EUR][1000 genomes]
rs10137409	0.94[ASN][1000 genomes]
rs10139683	0.82[EUR][1000 genomes]
rs10140063	0.81[EUR][1000 genomes]
rs10140857	0.94[ASN][1000 genomes]
rs10142803	0.82[EUR][1000 genomes]
rs10143136	0.82[EUR][1000 genomes]
rs10146637	0.82[EUR][1000 genomes]
rs10149435	0.93[ASN][1000 genomes]
rs10438127	0.90[ASN][1000 genomes]
rs1047556	0.90[ASN][1000 genomes]
rs11158034	0.82[EUR][1000 genomes]
rs11621351	0.94[ASN][1000 genomes]
rs11622636	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11622740	0.93[ASN][1000 genomes]
rs11848456	0.82[EUR][1000 genomes]
rs11848575	0.82[EUR][1000 genomes]
rs15870	0.94[ASN][1000 genomes]
rs17253695	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17672058	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17672364	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17740551	0.81[EUR][1000 genomes]
rs17832359	0.94[ASN][1000 genomes]
rs1815316	0.94[ASN][1000 genomes]
rs2075603	0.94[ASN][1000 genomes]
rs2094436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2147970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2147972	0.90[ASN][1000 genomes]
rs2182207	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296489	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2880103	0.81[EUR][1000 genomes]
rs35112084	0.80[EUR][1000 genomes]
rs3742566	0.88[ASN][1000 genomes]
rs3759667	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3825613	0.90[ASN][1000 genomes]
rs3825614	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4040064	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4525413	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4580079	0.80[EUR][1000 genomes]
rs4644	0.94[ASN][1000 genomes]
rs55710823	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56166765	0.80[EUR][1000 genomes]
rs57033289	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57571649	0.83[AFR][1000 genomes]
rs57970196	0.90[ASN][1000 genomes]
rs58269011	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58458194	0.82[EUR][1000 genomes]
rs58553156	0.87[EUR][1000 genomes]
rs66464079	0.81[EUR][1000 genomes]
rs66476033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66531545	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66782529	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66842809	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66871576	0.95[ASN][1000 genomes]
rs67008693	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67092614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67098772	0.87[ASN][1000 genomes]
rs67215571	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67386901	0.82[EUR][1000 genomes]
rs67395212	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67416413	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67588230	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67756714	0.88[ASN][1000 genomes]
rs67805055	0.90[ASN][1000 genomes]
rs67958555	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68083077	0.89[EUR][1000 genomes]
rs68138420	0.80[EUR][1000 genomes]
rs7140628	0.82[EUR][1000 genomes]
rs7140872	0.94[ASN][1000 genomes]
rs7147247	0.80[EUR][1000 genomes]
rs7155954	0.82[EUR][1000 genomes]
rs7159824	0.81[EUR][1000 genomes]
rs72715709	0.83[AFR][1000 genomes]
rs72718804	0.96[ASN][1000 genomes]
rs73263927	0.80[EUR][1000 genomes]
rs7493394	0.93[ASN][1000 genomes]
rs8005117	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55658800-55662200	Weak transcription	Aorta	Aorta
2	chr14:55658800-55662400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:55659000-55661400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:55659000-55661400	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:55659000-55661600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr14:55659000-55661800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:55659000-55661800	Weak transcription	HSMMtube	muscle
8	chr14:55659000-55662200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:55659000-55662400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr14:55659000-55663200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:55659200-55662000	Weak transcription	HepG2	liver
12	chr14:55659200-55662200	Weak transcription	Brain Germinal Matrix	brain
13	chr14:55659200-55668000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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