Variant report

Variant	rs2341806
Chromosome Location	chr3:98964877-98964878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13074381	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13318275	0.83[EUR][1000 genomes]
rs1402269	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1474207	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1851064	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1879376	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1879377	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28738836	0.83[EUR][1000 genomes]
rs6804198	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72934730	0.83[EUR][1000 genomes]
rs73859814	0.83[EUR][1000 genomes]
rs7610578	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7612730	0.83[EUR][1000 genomes]
rs7630458	0.83[EUR][1000 genomes]
rs939446	0.83[EUR][1000 genomes]
rs9830015	0.83[EUR][1000 genomes]
rs9836634	0.83[EUR][1000 genomes]
rs9857240	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1012359	chr3:98893510-98965013	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1798220	chr3:98894142-99020463	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv508230	chr3:98933987-98969536	Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1012332	chr3:98944446-98969737	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1013972	chr3:98944446-98998206	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv999173	chr3:98944446-99007686	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1002786	chr3:98944446-99013936	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1014178	chr3:98945194-98965013	Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98960400-98966800	Weak transcription	HSMMtube	muscle
2	chr3:98961600-98965000	Weak transcription	NHDF-Ad	bronchial
3	chr3:98961600-98965200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:98961600-98965200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:98961600-98967000	Weak transcription	Aorta	Aorta
6	chr3:98961800-98965000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:98964800-98965600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:98964800-98965800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:98964800-98965800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:98964800-98965800	Enhancers	NH-A	brain
11	chr3:98964800-98965800	Enhancers	NHLF	lung
12	chr3:98964800-98966000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:98964800-98966000	Enhancers	HUVEC	blood vessel
14	chr3:98964800-98966200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:98964800-98966200	Enhancers	HMEC	breast
16	chr3:98964800-98967800	Enhancers	NHEK	skin
17	chr3:98964800-98968200	Enhancers	Osteobl	bone
18	chr3:98964800-98968600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:98964800-98971400	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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