Variant report
Variant | rs2351653 |
---|---|
Chromosome Location | chr8:63217568-63217569 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10090048 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10090129 | 0.83[EUR][1000 genomes] |
rs10094502 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10095168 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10099748 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10101551 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10448028 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
rs1154592 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11774413 | 0.94[ASN][1000 genomes] |
rs11778470 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12216817 | 0.84[EUR][1000 genomes] |
rs12548234 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12549042 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
rs12679323 | 0.98[EUR][1000 genomes] |
rs12681000 | 0.87[EUR][1000 genomes] |
rs13249875 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs13250200 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs13252919 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs13255752 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13261910 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs13262465 | 0.90[EUR][1000 genomes] |
rs13264993 | 0.89[EUR][1000 genomes] |
rs13268451 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs13271280 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs13278227 | 0.81[AMR][1000 genomes] |
rs13281158 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1351702 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1384675 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1384678 | 0.93[ASN][1000 genomes] |
rs1384683 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1384684 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1483165 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1483173 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1483176 | 0.94[ASN][1000 genomes] |
rs1483177 | 0.90[EUR][1000 genomes] |
rs1552205 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2272014 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
rs2272015 | 0.82[EUR][1000 genomes] |
rs2351652 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2625413 | 0.95[ASN][1000 genomes] |
rs2882742 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4262319 | 0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4391424 | 0.93[ASN][1000 genomes] |
rs4532584 | 0.84[AMR][1000 genomes] |
rs4532585 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs4637821 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4738948 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4738949 | 0.84[ASN][1000 genomes] |
rs5020321 | 0.89[EUR][1000 genomes] |
rs6983788 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7002566 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs7017869 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7017975 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7827326 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs7834815 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs900491 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs900492 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9298062 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
rs9643536 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9643537 | 0.82[AMR][1000 genomes] |
rs9657031 | 1.00[ASN][1000 genomes] |
rs9987255 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1019143 | chr8:63142202-63390820 | Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
2 | esv2757277 | chr8:63156123-63260182 | Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
3 | esv2759621 | chr8:63156123-63260182 | Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv818632 | chr8:63208699-63222881 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
5 | esv2761215 | chr8:63212769-63229146 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
6 | nsv611445 | chr8:63214002-63227321 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
7 | esv3515684 | chr8:63214098-63226396 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
8 | esv2443694 | chr8:63214138-63226350 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
9 | nsv6225 | chr8:63214240-63262285 | Enhancers Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
10 | esv3515683 | chr8:63214648-63226246 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
11 | esv2484852 | chr8:63214789-63225986 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
12 | nsv8356 | chr8:63215158-63225678 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
13 | esv3515682 | chr8:63215200-63225306 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
14 | esv3479356 | chr8:63215208-63225350 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
15 | esv2159853 | chr8:63215215-63225390 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
16 | esv3515679 | chr8:63215239-63225378 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
17 | esv3479358 | chr8:63215256-63225324 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
18 | esv3515680 | chr8:63215271-63225335 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
19 | esv3479355 | chr8:63215273-63225361 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
20 | esv3479357 | chr8:63215294-63225342 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
21 | nsv515094 | chr8:63215334-63225046 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
22 | esv3479359 | chr8:63215336-63225232 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
23 | esv18522 | chr8:63215345-63225085 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
24 | esv3515681 | chr8:63215346-63225233 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
25 | nsv499495 | chr8:63215349-63225231 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
26 | esv3479360 | chr8:63215350-63225231 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
27 | esv3515686 | chr8:63215350-63225231 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
28 | esv3692989 | chr8:63215615-63222881 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
29 | nsv517136 | chr8:63215615-63222881 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
30 | nsv465699 | chr8:63215615-63222881 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
31 | nsv465700 | chr8:63215615-63222881 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
32 | nsv611446 | chr8:63215615-63222881 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
33 | nsv818634 | chr8:63215615-63222881 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
34 | esv2421340 | chr8:63215615-63224085 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
35 | nsv818635 | chr8:63215615-63245683 | Enhancers Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
36 | esv1795315 | chr8:63217551-63224085 | Enhancers | n/a | n/a | inside rSNPs | diseases |
37 | nsv442520 | chr8:63217551-63224085 | Enhancers | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:63217400-63217600 | Enhancers | iPS-15b Cell Line | embryonic stem cell |