Variant report

Variant	rs2351943
Chromosome Location	chr8:63255277-63255278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10104622	0.80[EUR][1000 genomes]
rs13266781	0.80[EUR][1000 genomes]
rs13267568	0.80[EUR][1000 genomes]
rs13267809	0.93[EUR][1000 genomes]
rs2167499	0.93[EUR][1000 genomes]
rs2198219	0.86[EUR][1000 genomes]
rs2218911	0.86[EUR][1000 genomes]
rs2351662	0.93[EUR][1000 genomes]
rs2351664	0.93[EUR][1000 genomes]
rs2351665	0.93[EUR][1000 genomes]
rs2351666	0.93[EUR][1000 genomes]
rs2351668	0.93[EUR][1000 genomes]
rs2351669	0.93[EUR][1000 genomes]
rs2351670	0.93[EUR][1000 genomes]
rs2351671	0.93[EUR][1000 genomes]
rs2351672	0.93[EUR][1000 genomes]
rs2351674	0.80[EUR][1000 genomes]
rs2351676	0.93[EUR][1000 genomes]
rs2683778	0.87[EUR][1000 genomes]
rs2882745	0.93[EUR][1000 genomes]
rs4442139	0.93[EUR][1000 genomes]
rs4595118	0.93[EUR][1000 genomes]
rs4737601	0.93[EUR][1000 genomes]
rs4737602	0.93[EUR][1000 genomes]
rs4737603	0.93[EUR][1000 genomes]
rs4738951	0.82[EUR][1000 genomes]
rs4738960	0.93[EUR][1000 genomes]
rs4738961	0.93[EUR][1000 genomes]
rs4738962	0.93[EUR][1000 genomes]
rs6472010	0.93[EUR][1000 genomes]
rs6472011	0.93[EUR][1000 genomes]
rs6472012	0.93[EUR][1000 genomes]
rs6472013	0.93[EUR][1000 genomes]
rs6472025	0.93[EUR][1000 genomes]
rs6472027	0.93[EUR][1000 genomes]
rs6991069	0.93[EUR][1000 genomes]
rs6993342	0.93[EUR][1000 genomes]
rs6999222	0.93[EUR][1000 genomes]
rs7011126	0.93[EUR][1000 genomes]
rs7819648	0.93[EUR][1000 genomes]
rs7819669	0.93[EUR][1000 genomes]
rs7837633	0.93[EUR][1000 genomes]
rs9298063	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv6225	chr8:63214240-63262285	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv890956	chr8:63251640-63346420	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63252800-63255800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:63253200-63255600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:63254000-63255400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:63254000-63256200	Enhancers	Brain Germinal Matrix	brain
5	chr8:63255200-63255400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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