Variant report

Variant	rs2352039
Chromosome Location	chr1:78819945-78819946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10873974	0.87[CHB][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap]
rs11162466	0.82[ASN][1000 genomes]
rs11162468	0.82[ASN][1000 genomes]
rs11162469	0.87[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];0.82[ASN][1000 genomes]
rs11162470	0.82[ASN][1000 genomes]
rs11804627	0.88[GIH][hapmap]
rs12029753	0.82[ASN][1000 genomes]
rs12406527	0.88[GIH][hapmap]
rs1328449	0.90[JPT][hapmap]
rs1328451	0.82[ASN][1000 genomes]
rs1581918	0.87[CHB][hapmap]
rs1581919	0.86[CHB][hapmap]
rs1927780	0.91[JPT][hapmap]
rs2352037	0.87[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap]
rs56267314	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv482697	chr1:78786028-78935333	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2352039	USP33	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78810200-78833200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:78815400-78821200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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