Variant report

Variant	rs2352401
Chromosome Location	chr8:63651149-63651150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10093544	0.88[ASN][1000 genomes]
rs10107976	0.88[ASN][1000 genomes]
rs10957238	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11780909	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11985179	0.88[ASN][1000 genomes]
rs12386973	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12708012	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1351348	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1351349	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1351352	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1471509	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1480118	0.91[ASN][1000 genomes]
rs1480124	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1480125	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1480127	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1480196	0.88[ASN][1000 genomes]
rs1531651	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1600537	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1600539	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1600540	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16929386	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16929397	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1904572	0.96[ASN][1000 genomes]
rs1904574	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2054523	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2127560	0.91[ASN][1000 genomes]
rs2883012	0.81[ASN][1000 genomes]
rs4621803	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58817091	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58821999	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6472047	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996317	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6996526	0.88[ASN][1000 genomes]
rs7001779	0.88[ASN][1000 genomes]
rs7003752	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7005463	0.91[ASN][1000 genomes]
rs7008248	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7008492	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7009434	0.91[ASN][1000 genomes]
rs7012264	0.88[ASN][1000 genomes]
rs7821374	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7828204	0.88[ASN][1000 genomes]
rs7837973	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs931131	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9650208	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs978396	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63649200-63660200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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