Variant report

Variant	rs2355020
Chromosome Location	chr11:17514430-17514431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11823071	0.86[ASN][1000 genomes]
rs12576915	0.85[AMR][1000 genomes]
rs2072224	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2072226	0.84[JPT][hapmap];0.87[AMR][1000 genomes]
rs2072231	0.86[JPT][hapmap];0.81[MEX][hapmap]
rs2072232	0.82[JPT][hapmap];0.85[AMR][1000 genomes]
rs2072233	0.82[JPT][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes]
rs4756894	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756896	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4756897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757533	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57527755	0.80[AMR][1000 genomes]
rs58158338	0.85[AMR][1000 genomes]
rs6486374	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486375	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486376	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486377	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7129639	0.82[CHB][hapmap];0.88[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv467714	chr11:17513147-17521825	Weak transcription Bivalent Enhancer Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553585	chr11:17513147-17521825	Bivalent Enhancer Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17507800-17515800	Weak transcription	Gastric	stomach
2	chr11:17508800-17515600	Weak transcription	Fetal Intestine Large	intestine
3	chr11:17511200-17526000	Weak transcription	Brain Substantia Nigra	brain
4	chr11:17512400-17515200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr11:17512600-17530000	Weak transcription	Right Atrium	heart
6	chr11:17513400-17515200	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr11:17513600-17514800	Enhancers	Pancreas	Pancrea
8	chr11:17513600-17530600	Strong transcription	Fetal Intestine Small	intestine
9	chr11:17514200-17515000	Bivalent Enhancer	Placenta	Placenta
10	chr11:17514200-17515000	Enhancers	Dnd41	blood
11	chr11:17514200-17516000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:17514400-17514800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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