Variant report

Variant	rs2363552
Chromosome Location	chr1:215247246-215247247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10127656	0.81[YRI][hapmap]
rs10746454	0.82[YRI][hapmap]
rs10746455	0.81[YRI][hapmap]
rs10779638	1.00[AFR][1000 genomes]
rs10779640	0.82[YRI][hapmap]
rs10864150	0.87[YRI][hapmap]
rs11120495	0.82[YRI][hapmap]
rs11120520	1.00[EUR][1000 genomes]
rs11120521	1.00[EUR][1000 genomes]
rs11120523	1.00[EUR][1000 genomes]
rs12070211	1.00[EUR][1000 genomes]
rs12076683	1.00[EUR][1000 genomes]
rs12239472	1.00[EUR][1000 genomes]
rs12239509	1.00[EUR][1000 genomes]
rs12742137	0.82[YRI][hapmap]
rs1416650	1.00[EUR][1000 genomes]
rs1556904	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs17024391	1.00[EUR][1000 genomes]
rs1947364	0.82[YRI][hapmap]
rs2363553	0.83[YRI][hapmap]
rs2363562	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2885815	0.82[YRI][hapmap]
rs4300189	0.82[YRI][hapmap]
rs4531266	0.81[YRI][hapmap]
rs4581247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4589083	0.89[AFR][1000 genomes]
rs4593794	1.00[EUR][1000 genomes]
rs4633260	1.00[EUR][1000 genomes]
rs5019190	1.00[EUR][1000 genomes]
rs6662353	0.81[YRI][hapmap]
rs6675926	0.82[YRI][hapmap]
rs6688713	0.86[YRI][hapmap]
rs6696333	0.82[YRI][hapmap]
rs73088281	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73088299	1.00[EUR][1000 genomes]
rs7513709	0.82[YRI][hapmap]
rs7516689	0.81[YRI][hapmap]
rs7528816	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7535436	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7541543	0.81[YRI][hapmap]
rs7547655	0.81[YRI][hapmap]
rs7550501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7551562	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs950987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215229400-215253000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215231600-215247600	Weak transcription	NHDF-Ad	bronchial

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