Variant report

Variant	rs2363553
Chromosome Location	chr1:215247307-215247308
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1015244	1.00[CHB][hapmap]
rs10779638	0.86[ASN][1000 genomes]
rs12061587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12069528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12069967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12121815	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12134532	0.85[EUR][1000 genomes]
rs12137544	0.85[CEU][hapmap]
rs12138874	0.82[CEU][hapmap]
rs12145594	0.85[CEU][hapmap]
rs12146036	0.85[CEU][hapmap]
rs1339409	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1538546	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1901624	0.85[EUR][1000 genomes]
rs1947364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363552	0.83[YRI][hapmap]
rs2802656	1.00[JPT][hapmap]
rs34804996	0.83[EUR][1000 genomes]
rs34822820	0.85[EUR][1000 genomes]
rs4433363	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4573492	1.00[CHB][hapmap]
rs4589083	0.86[ASN][1000 genomes]
rs55922125	0.81[ASN][1000 genomes]
rs56036238	0.81[ASN][1000 genomes]
rs56274886	0.81[ASN][1000 genomes]
rs61818265	0.81[ASN][1000 genomes]
rs61818266	0.81[ASN][1000 genomes]
rs61818267	0.81[ASN][1000 genomes]
rs61818268	0.81[ASN][1000 genomes]
rs61818271	0.81[ASN][1000 genomes]
rs61818272	0.81[ASN][1000 genomes]
rs61818276	0.81[ASN][1000 genomes]
rs61818277	0.81[ASN][1000 genomes]
rs61818278	0.81[ASN][1000 genomes]
rs61818279	0.81[ASN][1000 genomes]
rs61818290	0.81[ASN][1000 genomes]
rs61818295	0.81[ASN][1000 genomes]
rs61818296	0.86[ASN][1000 genomes]
rs61818298	0.86[ASN][1000 genomes]
rs61818301	0.86[ASN][1000 genomes]
rs61818303	0.86[ASN][1000 genomes]
rs6665177	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6703032	0.85[CEU][hapmap]
rs7530450	1.00[CHB][hapmap]
rs7535436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs7551562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215229400-215253000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215231600-215247600	Weak transcription	NHDF-Ad	bronchial

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