Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215285008..215287414-chr1:215293521..215295333,2	MCF-7	breast:
2	chr1:215280557..215283652-chr1:215283955..215286310,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10779636	0.84[CEU][hapmap]
rs10864147	0.85[CEU][hapmap]
rs10864151	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10864158	0.87[ASN][1000 genomes]
rs11120481	0.88[CEU][hapmap]
rs11120482	0.88[CEU][hapmap]
rs11120504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1157492	0.92[CEU][hapmap]
rs11586565	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11802959	0.88[CEU][hapmap]
rs12028008	0.84[CEU][hapmap]
rs12031308	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs12038616	0.91[CHB][hapmap]
rs12038695	0.91[CHB][hapmap]
rs12038773	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12041014	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12120091	0.82[CHB][hapmap]
rs1339406	0.89[JPT][hapmap]
rs1349674	0.89[CEU][hapmap]
rs2363554	0.84[JPT][hapmap]
rs2363561	0.82[CHB][hapmap]
rs2885812	0.83[JPT][hapmap]
rs2885816	0.82[CHB][hapmap]
rs4655271	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4655272	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6540882	0.81[CEU][hapmap]
rs6672978	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7417100	0.81[JPT][hapmap]
rs7522552	0.91[CHB][hapmap]
rs7528475	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215278200-215286600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:215281600-215287400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:215283400-215291200	Weak transcription	Fetal Brain Female	brain
4	chr1:215285400-215287000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215285400-215287200	Enhancers	Osteobl	bone
6	chr1:215285400-215287800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:215285600-215286600	Weak transcription	NHEK	skin
8	chr1:215285600-215286800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:215285600-215287000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:215285600-215287200	Weak transcription	NHLF	lung
11	chr1:215285800-215286800	Weak transcription	HMEC	breast
12	chr1:215286000-215286600	Genic enhancers	NHDF-Ad	bronchial

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