Variant report

Variant	rs2364862
Chromosome Location	chr1:215890007-215890008
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12403674	0.87[CHB][hapmap]
rs12407588	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs17025226	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs17025239	0.81[JPT][hapmap]
rs2364863	0.84[JPT][hapmap]
rs2820706	0.87[JPT][hapmap]
rs2886199	0.87[CHB][hapmap]
rs3845527	0.87[CHB][hapmap]
rs4375233	0.88[CHB][hapmap]
rs4628479	0.88[CHB][hapmap]
rs4655286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655423	0.93[CHB][hapmap]
rs4655426	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs6665313	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv873171	chr1:215825167-215925167	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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