Variant report

Variant	rs2368376
Chromosome Location	chr2:184030905-184030906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1005281	chr2:183803173-184093877	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2763287	chr2:183939173-184037893	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv875486	chr2:184016627-184095979	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv821842	chr2:184030701-184037931	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183990000-184050000	Weak transcription	Aorta	Aorta
2	chr2:183990200-184036400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:183990800-184031000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:183991000-184048400	Weak transcription	Brain Angular Gyrus	brain
5	chr2:183991000-184053400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:183991000-184055400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:183991200-184035400	Weak transcription	Fetal Brain Male	brain
8	chr2:183991400-184034000	Weak transcription	NHLF	lung
9	chr2:183991400-184049600	Weak transcription	NHDF-Ad	bronchial
10	chr2:183992400-184047600	Weak transcription	Hela-S3	cervix
11	chr2:184009000-184043800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:184009200-184034000	Weak transcription	Esophagus	oesophagus
13	chr2:184009200-184043600	Weak transcription	Psoas Muscle	Psoas
14	chr2:184009200-184048400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:184009400-184047200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr2:184014200-184031400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:184015000-184062000	Weak transcription	Small Intestine	intestine
18	chr2:184018400-184047400	Weak transcription	Pancreas	Pancrea
19	chr2:184019000-184031200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr2:184019000-184036600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr2:184019000-184043600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr2:184019000-184050000	Weak transcription	Gastric	stomach
23	chr2:184019000-184053400	Weak transcription	Placenta	Placenta
24	chr2:184022000-184031200	Strong transcription	Dnd41	blood
25	chr2:184023000-184031400	Strong transcription	Fetal Thymus	thymus
26	chr2:184023000-184033000	Strong transcription	Primary T cells from cord blood	blood
27	chr2:184023400-184034200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr2:184024200-184031200	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr2:184024200-184031400	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr2:184025000-184031200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr2:184025000-184031400	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr2:184025000-184031400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr2:184025200-184031200	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr2:184025200-184031200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr2:184025200-184031400	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr2:184025600-184031800	Strong transcription	A549	lung
37	chr2:184026000-184054600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr2:184026000-184057600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr2:184026600-184043200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr2:184026600-184058800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr2:184026800-184031000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr2:184026800-184047400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr2:184027400-184035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:184027600-184057600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr2:184028400-184031000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr2:184028600-184045600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr2:184028800-184043200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr2:184028800-184043600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr2:184029000-184036400	Weak transcription	Spleen	Spleen
50	chr2:184029000-184047400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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