Variant report

Variant	rs2368550
Chromosome Location	chr5:97663065-97663066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10036788	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs10036839	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs10050404	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073933	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10074663	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953877	0.89[AMR][1000 genomes]
rs11953894	0.89[AMR][1000 genomes]
rs11954911	0.89[AMR][1000 genomes]
rs11955115	0.89[AMR][1000 genomes]
rs11955987	0.89[AMR][1000 genomes]
rs13436010	0.87[ASN][1000 genomes]
rs1378443	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1378445	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455424	0.93[AMR][1000 genomes]
rs1455425	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs17165878	0.89[AMR][1000 genomes]
rs59423561	0.89[AMR][1000 genomes]
rs60702807	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61740530	1.00[ASN][1000 genomes]
rs62369875	0.84[EUR][1000 genomes]
rs6596727	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6596729	1.00[ASN][1000 genomes]
rs6596743	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6862206	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs6863762	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871138	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6872831	0.93[AMR][1000 genomes]
rs6877032	0.89[AMR][1000 genomes]
rs6882939	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6885953	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887168	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889222	1.00[ASN][1000 genomes]
rs73159226	0.89[AMR][1000 genomes]
rs7702702	0.84[EUR][1000 genomes]
rs7714163	0.85[AMR][1000 genomes]
rs7718848	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728104	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97660000-97669800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:97663000-97663800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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