Variant report

Variant	rs2373277
Chromosome Location	chr7:147656768-147656769
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147652480..147654051-chr7:147655733..147657360,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1006506	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10808047	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs12703987	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883780	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17170777	0.87[ASN][1000 genomes]
rs17170785	0.85[JPT][hapmap]
rs17170800	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2246605	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2249958	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2250061	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2254307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2373276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2373284	0.82[YRI][hapmap]
rs2707579	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707593	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2708249	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2708252	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2708277	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2708282	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2710084	0.91[CEU][hapmap]
rs2710094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs28522281	0.85[ASN][1000 genomes]
rs2888540	0.81[YRI][hapmap]
rs4296960	0.81[YRI][hapmap]
rs66949315	0.85[ASN][1000 genomes]
rs73168548	0.85[ASN][1000 genomes]
rs7793325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9640511	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9691133	0.86[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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