Variant report

Variant	rs2373280
Chromosome Location	chr7:147660612-147660613
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10224171	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10227736	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10229688	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap]
rs10240482	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10240503	0.92[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs10253762	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10261595	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs10269138	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10269250	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10269257	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10276996	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs10281326	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs10452891	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs10485853	1.00[CEU][hapmap]
rs10500194	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap]
rs12530525	1.00[CEU][hapmap]
rs12532080	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs12532103	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs12532213	1.00[CEU][hapmap]
rs12536135	1.00[CEU][hapmap]
rs12536614	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12539425	1.00[CEU][hapmap]
rs12539685	1.00[CEU][hapmap]
rs12540014	1.00[CEU][hapmap];0.82[CHD][hapmap];0.92[TSI][hapmap]
rs12540049	1.00[CEU][hapmap]
rs12540218	1.00[CEU][hapmap]
rs12667420	1.00[CEU][hapmap]
rs13225246	1.00[CEU][hapmap]
rs13225250	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs13225815	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs13228312	1.00[CEU][hapmap]
rs13228553	1.00[CEU][hapmap]
rs13228704	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs13233277	1.00[CEU][hapmap]
rs13236734	1.00[CEU][hapmap]
rs13236937	1.00[CEU][hapmap]
rs13238527	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs17170767	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17170789	1.00[CEU][hapmap]
rs17170793	1.00[CEU][hapmap]
rs17170794	1.00[CEU][hapmap]
rs2373278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs2373286	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2373287	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34347668	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58372981	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61438859	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6947287	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6947595	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6955458	1.00[CEU][hapmap]
rs6957073	1.00[CEU][hapmap]
rs6962266	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs719310	1.00[CEU][hapmap]
rs719311	1.00[CEU][hapmap]
rs719312	1.00[CEU][hapmap]
rs7789579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7797584	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs7805706	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links