Variant report
| Variant | rs2373288 |
|---|---|
| Chromosome Location | chr7:147686815-147686816 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:147680486..147683075-chr7:147685305..147687818,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11762995 | 0.88[EUR][1000 genomes] |
| rs11766463 | 0.88[EUR][1000 genomes] |
| rs11768090 | 1.00[ASN][1000 genomes] |
| rs11771401 | 0.88[EUR][1000 genomes] |
| rs1882687 | 1.00[ASN][1000 genomes] |
| rs1922886 | 0.91[ASN][1000 genomes] |
| rs1922887 | 1.00[ASN][1000 genomes] |
| rs2707555 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2707577 | 1.00[ASN][1000 genomes] |
| rs2707578 | 1.00[ASN][1000 genomes] |
| rs2708275 | 1.00[ASN][1000 genomes] |
| rs2708276 | 1.00[ASN][1000 genomes] |
| rs2710086 | 1.00[ASN][1000 genomes] |
| rs73464281 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73743659 | 1.00[ASN][1000 genomes] |
| rs73743660 | 1.00[ASN][1000 genomes] |
| rs7779536 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7780285 | 0.88[EUR][1000 genomes] |
| rs7793537 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9640247 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023913 | chr7:147521075-147806318 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026058 | chr7:147521109-147783042 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv539179 | chr7:147521109-147783042 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv934002 | chr7:147521110-147807705 | Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv1017610 | chr7:147523752-147806427 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 6 | nsv889399 | chr7:147643923-147712471 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv889400 | chr7:147650411-147712471 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:147685600-147688400 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr7:147686400-147687200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
