Variant report

Variant	rs2373289
Chromosome Location	chr7:147712309-147712310
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10224783	0.96[YRI][hapmap]
rs10227836	0.81[YRI][hapmap]
rs10249855	0.83[CHB][hapmap]
rs10250079	0.95[AFR][1000 genomes]
rs10253458	0.95[AFR][1000 genomes]
rs10253762	0.83[YRI][hapmap]
rs10256166	0.96[YRI][hapmap]
rs10261595	0.87[YRI][hapmap]
rs10261693	0.88[YRI][hapmap]
rs10264127	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10264877	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs10264997	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs10269138	0.80[YRI][hapmap]
rs10269257	0.87[YRI][hapmap]
rs10270778	0.84[YRI][hapmap]
rs10272032	0.95[AFR][1000 genomes]
rs10276996	0.87[YRI][hapmap]
rs10279557	0.84[YRI][hapmap]
rs10279570	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10280388	0.90[CEU][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs10281082	1.00[CEU][hapmap]
rs10500195	0.95[CEU][hapmap];0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs10952721	1.00[CEU][hapmap]
rs10952722	1.00[CEU][hapmap]
rs10952723	1.00[CEU][hapmap]
rs10952724	0.95[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11972972	0.89[YRI][hapmap]
rs11974390	0.85[YRI][hapmap]
rs12055952	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531913	1.00[CEU][hapmap]
rs12532290	0.80[CHB][hapmap]
rs12537012	0.80[CEU][hapmap]
rs12539260	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539425	0.96[YRI][hapmap]
rs12667149	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes]
rs12667799	0.90[CEU][hapmap]
rs12670399	0.89[CEU][hapmap]
rs12671605	1.00[CEU][hapmap]
rs12673714	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12674206	0.90[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs12674208	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12703988	1.00[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs12703990	1.00[CEU][hapmap]
rs12703992	1.00[CEU][hapmap]
rs13230414	0.84[CEU][hapmap]
rs13243208	0.83[CEU][hapmap]
rs16882145	1.00[CEU][hapmap]
rs16883782	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17133865	1.00[CEU][hapmap]
rs17170795	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17170796	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1962426	0.81[CEU][hapmap]
rs1990057	1.00[CEU][hapmap]
rs1990058	1.00[CEU][hapmap]
rs2214681	0.80[JPT][hapmap]
rs2373281	0.81[CEU][hapmap]
rs2373285	0.81[CEU][hapmap]
rs2373286	0.82[YRI][hapmap]
rs2527047	1.00[CEU][hapmap]
rs2527054	1.00[CEU][hapmap]
rs2527058	1.00[CEU][hapmap]
rs2527062	1.00[CEU][hapmap]
rs2527063	1.00[CEU][hapmap]
rs2527064	1.00[CEU][hapmap]
rs2527065	1.00[CEU][hapmap]
rs2527066	1.00[CEU][hapmap]
rs2527068	0.94[CEU][hapmap]
rs2707558	1.00[CEU][hapmap]
rs2707583	1.00[CEU][hapmap]
rs2710143	1.00[CEU][hapmap]
rs2710144	1.00[CEU][hapmap]
rs2710145	1.00[CEU][hapmap]
rs2710152	1.00[CEU][hapmap]
rs34395632	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34607423	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35532322	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36041215	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4725761	1.00[CEU][hapmap]
rs4726904	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4726905	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4726906	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs4726907	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4726915	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57995398	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6960266	1.00[CEU][hapmap]
rs6970931	0.84[YRI][hapmap]
rs6979577	1.00[CEU][hapmap]
rs715183	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs719311	0.96[YRI][hapmap]
rs757695	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs757697	1.00[CEU][hapmap]
rs7789579	0.80[YRI][hapmap]
rs7805706	0.83[YRI][hapmap]
rs9640249	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9640250	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147709200-147717800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:147709600-147718400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:147711600-147716400	Enhancers	Fetal Lung	lung
4	chr7:147712000-147712400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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