Variant report

Variant	rs2377902
Chromosome Location	chr10:50757504-50757505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:50757457-50758111	MCF10A-Er-Src	breast:	n/a	chr10:50757816-50757827 chr10:50757837-50757848
2	STAT1	chr10:50757008-50759453	Hela-S3	cervix:	n/a	chr10:50757837-50757848 chr10:50757816-50757827

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50756033..50757654-chr10:50761828..50764703,2	K562	blood:

Variant related genes	Relation type
ENSG00000271237	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10776582	0.84[ASN][1000 genomes]
rs10857507	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10857508	0.82[ASN][1000 genomes]
rs10857509	0.81[ASN][1000 genomes]
rs11101159	0.83[ASN][1000 genomes]
rs11101164	0.81[ASN][1000 genomes]
rs12242851	0.83[ASN][1000 genomes]
rs12570332	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1917801	0.82[ASN][1000 genomes]
rs1917802	0.82[ASN][1000 genomes]
rs1949883	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1949884	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2103202	0.92[ASN][1000 genomes]
rs3750746	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4453140	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs4838527	0.82[ASN][1000 genomes]
rs4838529	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs6537539	0.90[ASN][1000 genomes]
rs7078115	0.84[ASN][1000 genomes]
rs7080837	0.84[ASN][1000 genomes]
rs7081904	0.84[ASN][1000 genomes]
rs7095259	0.84[ASN][1000 genomes]
rs7098129	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50755400-50760000	Weak transcription	HSMMtube	muscle
2	chr10:50755600-50757800	Weak transcription	Osteobl	bone
3	chr10:50755600-50758000	Weak transcription	HUVEC	blood vessel
4	chr10:50756200-50761400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:50756400-50762000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:50756600-50758400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr10:50756800-50758000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:50756800-50758200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:50756800-50760800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:50757000-50759600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:50757200-50759000	Weak transcription	Aorta	Aorta
12	chr10:50757200-50763400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:50757400-50760000	Enhancers	Hela-S3	cervix
14	chr10:50757400-50763000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:50757400-50763200	Enhancers	NHEK	skin
16	chr10:50757400-50763400	Enhancers	HMEC	breast

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