Variant report

Variant	rs2378401
Chromosome Location	chr1:220802354-220802355
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1073460	0.94[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs10746403	0.83[AMR][1000 genomes]
rs10779414	0.82[AMR][1000 genomes]
rs1193032	0.83[AMR][1000 genomes]
rs12048541	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs12410279	0.83[ASN][1000 genomes]
rs17007885	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs1933002	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1933008	0.95[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs2253641	0.94[CEU][hapmap];0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2378402	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2589578	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2589588	0.94[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs2786601	0.94[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs2786604	0.94[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2786607	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2786609	0.82[ASN][1000 genomes]
rs2786613	0.94[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2786619	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2889928	0.85[ASN][1000 genomes]
rs2993209	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2994527	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3737296	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4011894	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4846657	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61830219	0.86[ASN][1000 genomes]
rs6541155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6677302	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6699189	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6699196	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7514431	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9431262	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
2	chr1:220767800-220826400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:220768000-220804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:220768000-220813800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:220778800-220837200	Weak transcription	NHEK	skin
6	chr1:220782800-220825800	Weak transcription	Fetal Brain Male	brain
7	chr1:220783200-220815000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:220784200-220836600	Weak transcription	Fetal Lung	lung
9	chr1:220784800-220815000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:220785000-220815400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:220785800-220808600	Weak transcription	Brain Anterior Caudate	brain
12	chr1:220791000-220804200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:220791200-220828600	Weak transcription	Right Ventricle	heart
14	chr1:220791200-220841200	Weak transcription	HMEC	breast
15	chr1:220792000-220834200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:220792800-220803600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr1:220796200-220827800	Weak transcription	Gastric	stomach
18	chr1:220798000-220836400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:220798800-220826200	Weak transcription	Brain Angular Gyrus	brain
20	chr1:220799600-220827000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr1:220799800-220803400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:220799800-220814600	Weak transcription	Aorta	Aorta
23	chr1:220800000-220802400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:220800000-220804400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr1:220800000-220804400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:220800000-220806200	Weak transcription	Adipose Nuclei	Adipose
27	chr1:220800000-220808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr1:220800000-220814800	Weak transcription	Fetal Muscle Leg	muscle
29	chr1:220800000-220837800	Weak transcription	Esophagus	oesophagus
30	chr1:220800200-220808600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr1:220800200-220814600	Weak transcription	Fetal Stomach	stomach
32	chr1:220800400-220804800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:220800400-220806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:220800400-220811800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr1:220800600-220805800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:220800600-220808800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:220800800-220826400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:220801000-220808600	Weak transcription	Brain Germinal Matrix	brain
39	chr1:220801400-220809800	Weak transcription	Fetal Brain Female	brain
40	chr1:220801800-220807000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr1:220801800-220808400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:220801800-220815200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr1:220802000-220804400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:220802000-220805400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:220802200-220802400	Enhancers	H9 Cell Line	embryonic stem cell
46	chr1:220802200-220803600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr1:220802200-220814600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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