Variant report

Variant	rs2382999
Chromosome Location	chr8:125979577-125979578
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11993478	0.82[JPT][hapmap]
rs2590665	0.88[JPT][hapmap]
rs2590667	0.88[JPT][hapmap]
rs2725878	0.88[JPT][hapmap]
rs28727368	0.83[ASN][1000 genomes]
rs3866472	0.88[JPT][hapmap]
rs3909714	0.88[JPT][hapmap]
rs3909715	0.88[JPT][hapmap]
rs4006739	0.88[JPT][hapmap]
rs6470330	0.86[JPT][hapmap]
rs6651232	0.84[JPT][hapmap]
rs7018326	0.85[CEU][hapmap]
rs7018438	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125969800-125985000	Weak transcription	Right Atrium	heart
2	chr8:125976200-125979800	Enhancers	Placenta	Placenta
3	chr8:125977400-125982000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:125977400-125985400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:125977600-125985200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:125977600-125985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:125979400-125979600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:125979400-125979600	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr8:125979400-125979600	Enhancers	Fetal Heart	heart
10	chr8:125979400-125979600	Enhancers	Fetal Muscle Leg	muscle
11	chr8:125979400-125979600	Weak transcription	K562	blood
12	chr8:125979400-125979600	Bivalent/Poised TSS	Osteobl	bone
13	chr8:125979400-125979800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:125979400-125979800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr8:125979400-125979800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:125979400-125979800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:125979400-125979800	Active TSS	Brain Anterior Caudate	brain
18	chr8:125979400-125980000	Enhancers	Brain Substantia Nigra	brain
19	chr8:125979400-125980400	Flanking Active TSS	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links