Variant report

Variant	rs2388537
Chromosome Location	chr13:30928289-30928290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12583912	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17074553	0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs200524	0.81[ASN][1000 genomes]
rs202080	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs7331369	1.00[MEX][hapmap]
rs8002503	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530602	chr13:30911025-31404272	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv455853	chr13:30911531-30951514	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv561394	chr13:30911531-30951514	Enhancers Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30920600-30929400	Weak transcription	Spleen	Spleen
2	chr13:30921400-30928600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:30922200-30928800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr13:30922200-30937800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr13:30922800-30928400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr13:30924600-30940000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr13:30927600-30928600	Weak transcription	Primary B cells from cord blood	blood
8	chr13:30927600-30928600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr13:30927800-30931400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr13:30927800-30939600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr13:30928000-30929200	Enhancers	Fetal Thymus	thymus
12	chr13:30928000-30930600	Enhancers	Primary hematopoietic stem cells	blood
13	chr13:30928200-30928800	Enhancers	Thymus	Thymus
14	chr13:30928200-30928800	Enhancers	Dnd41	blood
15	chr13:30928200-30929200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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