Variant report

Variant	rs2389372
Chromosome Location	chr13:96399838-96399839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96394267..96396920-chr13:96398663..96400350,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11070154	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11616456	0.85[CEU][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11619004	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11839843	0.81[EUR][1000 genomes]
rs12858210	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12876018	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1411557	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1537030	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs2389532	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs3087339	0.91[YRI][hapmap]
rs3125431	0.88[YRI][hapmap]
rs35836619	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs3848074	0.85[CEU][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4547218	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs4773928	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6492817	0.95[YRI][hapmap]
rs6492824	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7323150	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7327549	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7328703	0.95[CHB][hapmap]
rs7329098	0.93[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7338859	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs7981593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7981923	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7986005	0.85[CHB][hapmap]
rs7995045	0.80[AFR][1000 genomes]
rs7995306	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs9302086	0.91[YRI][hapmap]
rs9556503	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9556504	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9556512	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs9556513	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs9561932	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9561935	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs9561948	0.92[YRI][hapmap]
rs9561951	0.91[YRI][hapmap]
rs9561953	0.84[AFR][1000 genomes]
rs9561964	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9561967	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs9561969	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs9561973	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs9561975	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs9561995	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs9590313	1.00[YRI][hapmap]
rs9590318	0.95[YRI][hapmap]
rs9590321	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96366400-96415800	Weak transcription	HSMMtube	muscle
2	chr13:96367600-96436000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:96367800-96430200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:96386800-96415200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr13:96386800-96415600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr13:96387000-96403400	Weak transcription	Primary B cells from cord blood	blood
7	chr13:96387000-96409600	Weak transcription	Liver	Liver
8	chr13:96387000-96412000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:96387000-96412800	Weak transcription	Dnd41	blood
10	chr13:96387000-96415400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr13:96387000-96428800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr13:96392800-96413000	Weak transcription	Fetal Muscle Leg	muscle
13	chr13:96393600-96404800	Weak transcription	Fetal Heart	heart
14	chr13:96393800-96409800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:96393800-96412800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr13:96393800-96415800	Weak transcription	Osteobl	bone
17	chr13:96394000-96412400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr13:96394000-96415200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr13:96394000-96435800	Weak transcription	A549	lung
20	chr13:96394400-96438400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr13:96394600-96412200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr13:96394600-96413600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr13:96394600-96413800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr13:96394600-96435800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr13:96394800-96401600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr13:96394800-96401600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr13:96394800-96406200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr13:96394800-96409600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr13:96394800-96412800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr13:96394800-96412800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr13:96394800-96414800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr13:96394800-96420600	Weak transcription	Esophagus	oesophagus
33	chr13:96395000-96409600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr13:96395200-96414000	Weak transcription	Fetal Stomach	stomach
35	chr13:96395400-96413000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr13:96395800-96408200	Weak transcription	Primary T cells from cord blood	blood
37	chr13:96396000-96401800	Weak transcription	Gastric	stomach
38	chr13:96396000-96411600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr13:96396000-96412200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr13:96396000-96414000	Weak transcription	Lung	lung
41	chr13:96396200-96406200	Weak transcription	Right Atrium	heart
42	chr13:96396400-96405000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr13:96397600-96400200	Enhancers	Fetal Intestine Large	intestine
44	chr13:96397800-96400600	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr13:96398000-96406200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr13:96398000-96409600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr13:96398200-96412400	Weak transcription	HSMM	muscle
48	chr13:96398200-96424400	Weak transcription	NHDF-Ad	bronchial
49	chr13:96398400-96404200	Weak transcription	Right Ventricle	heart
50	chr13:96398400-96404200	Weak transcription	GM12878-XiMat	blood

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