The 2.0 version of rSNPBase

Variant report

Variant rs2389393
Chromosome Location chr13:96466793-96466794
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:96444400-96477600 Weak transcription Brain Angular Gyrus brain
2 chr13:96444400-96477600 Weak transcription NHLF lung
3 chr13:96444400-96485600 Weak transcription NHDF-Ad bronchial
4 chr13:96445600-96477400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr13:96445800-96490000 Weak transcription HepG2 liver
6 chr13:96446200-96477400 Weak transcription Gastric stomach
7 chr13:96446800-96477400 Weak transcription Muscle Satellite Cultured Cells --
8 chr13:96446800-96477400 Weak transcription HSMMtube muscle
9 chr13:96447200-96477400 Weak transcription Osteobl bone
10 chr13:96452000-96490600 Weak transcription Fetal Kidney kidney
11 chr13:96455000-96467800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr13:96458800-96477400 Weak transcription NH-A brain
13 chr13:96460400-96477200 Weak transcription A549 lung
14 chr13:96460400-96477400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr13:96462000-96468000 Weak transcription Pancreas Pancrea
16 chr13:96462000-96477400 Weak transcription HSMM muscle
17 chr13:96462200-96477200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr13:96462200-96477400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr13:96462600-96467800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr13:96462600-96485600 Weak transcription Hela-S3 cervix
21 chr13:96464800-96466800 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
22 chr13:96465000-96466800 ZNF genes & repeats H1 Cell Line embryonic stem cell
23 chr13:96465000-96466800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr13:96465000-96466800 ZNF genes & repeats Fetal Brain Female brain
25 chr13:96465000-96466800 ZNF genes & repeats Ovary ovary
26 chr13:96465000-96468800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr13:96465200-96466800 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
28 chr13:96465400-96466800 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr13:96465400-96466800 ZNF genes & repeats Brain Cingulate Gyrus brain
30 chr13:96465400-96466800 ZNF genes & repeats Fetal Muscle Leg muscle
31 chr13:96465600-96466800 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
32 chr13:96465600-96481200 Weak transcription Psoas Muscle Psoas
33 chr13:96466000-96466800 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
34 chr13:96466000-96466800 ZNF genes & repeats Brain Inferior Temporal Lobe brain
35 chr13:96466000-96466800 ZNF genes & repeats Fetal Intestine Small intestine
36 chr13:96466000-96466800 ZNF genes & repeats Fetal Stomach stomach
37 chr13:96466000-96467000 ZNF genes & repeats Fetal Muscle Trunk muscle
38 chr13:96466200-96466800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr13:96466200-96468000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr13:96466200-96476600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr13:96466200-96477400 Weak transcription Fetal Intestine Large intestine
42 chr13:96466200-96477800 Weak transcription Duodenum Mucosa Duodenum
43 chr13:96466200-96480800 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr13:96466200-96481400 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr13:96466400-96468000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr13:96466400-96477200 Weak transcription Brain Hippocampus Middle brain
47 chr13:96466400-96477400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr13:96466400-96485400 Weak transcription NHEK skin
49 chr13:96466400-96486000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr13:96466600-96467000 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015