Variant report

Variant	rs2390073
Chromosome Location	chr4:121976226-121976227
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17353430	0.89[AFR][1000 genomes]
rs17353535	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17353576	0.89[AFR][1000 genomes]
rs17432229	0.82[AFR][1000 genomes]
rs3733559	0.83[AFR][1000 genomes]
rs3775914	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs3775915	0.89[AFR][1000 genomes]
rs4833703	0.82[AFR][1000 genomes]
rs56017855	0.89[AFR][1000 genomes]
rs72684005	0.83[AFR][1000 genomes]
rs72684020	0.83[AFR][1000 genomes]
rs72684027	0.89[AFR][1000 genomes]
rs72684031	0.89[AFR][1000 genomes]
rs72684033	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121952200-121979600	Weak transcription	Psoas Muscle	Psoas
2	chr4:121961200-121978000	Weak transcription	Lung	lung
3	chr4:121962800-121978600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:121967000-121982400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:121972000-121984600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:121972200-121985000	Weak transcription	Fetal Intestine Large	intestine
7	chr4:121974400-121978200	Weak transcription	Ovary	ovary
8	chr4:121975000-121979000	Weak transcription	Fetal Lung	lung
9	chr4:121975200-121979000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:121975200-121990200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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