Variant report

Variant	rs2390687
Chromosome Location	chr4:125380969-125380970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1492743	1.00[AMR][1000 genomes]
rs1565663	1.00[AMR][1000 genomes]
rs312506	1.00[AMR][1000 genomes]
rs4833302	1.00[ASW][hapmap]
rs4833985	1.00[AMR][1000 genomes]
rs6831902	1.00[CEU][hapmap]
rs7672091	1.00[AMR][1000 genomes]
rs7698315	1.00[AMR][1000 genomes]
rs923776	1.00[AMR][1000 genomes]
rs923777	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125378800-125382000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:125379400-125382000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:125379600-125381600	Enhancers	Stomach Mucosa	stomach
4	chr4:125380200-125381400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:125380200-125382000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:125380400-125381000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr4:125380400-125381200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:125380400-125382200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:125380600-125381200	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr4:125380600-125381400	Enhancers	Fetal Muscle Leg	muscle
11	chr4:125380800-125381000	Enhancers	Ovary	ovary
12	chr4:125380800-125381200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:125380800-125381200	Flanking Active TSS	Fetal Lung	lung
14	chr4:125380800-125381400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:125380800-125381600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:125380800-125381600	Active TSS	Right Atrium	heart
17	chr4:125380800-125381800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:125380800-125382200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:125380800-125387200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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