Variant report
| Variant | rs239508 |
|---|---|
| Chromosome Location | chr6:80689875-80689876 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:80689541..80692143-chr6:80694407..80696452,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12663071 | 0.90[EUR][1000 genomes] |
| rs12663092 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1355576 | 0.81[ASN][1000 genomes] |
| rs151586 | 0.82[ASN][1000 genomes] |
| rs151650 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs151674 | 0.82[ASN][1000 genomes] |
| rs1818439 | 0.81[ASN][1000 genomes] |
| rs2117446 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs239506 | 0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs239545 | 0.81[ASN][1000 genomes] |
| rs239546 | 0.82[ASN][1000 genomes] |
| rs239550 | 0.82[ASN][1000 genomes] |
| rs239551 | 0.82[ASN][1000 genomes] |
| rs35626280 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4706821 | 0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs60373337 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6915142 | 0.81[ASN][1000 genomes] |
| rs6918121 | 0.81[ASN][1000 genomes] |
| rs6939120 | 0.81[ASN][1000 genomes] |
| rs9294167 | 0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9343948 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9343950 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9343951 | 0.80[ASN][1000 genomes] |
| rs9343952 | 0.88[EUR][1000 genomes] |
| rs9343956 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9352786 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028607 | chr6:79853272-80767716 | Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032347 | chr6:80284809-80694778 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:80687800-80696400 | Enhancers | Fetal Thymus | thymus |
| 2 | chr6:80688200-80691200 | Enhancers | Thymus | Thymus |
