Variant report
Variant | rs239546 |
---|---|
Chromosome Location | chr6:80677558-80677559 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12663071 | 0.93[ASN][1000 genomes] |
rs12663092 | 1.00[ASN][1000 genomes] |
rs1355576 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs149293 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs1512120 | 0.92[EUR][1000 genomes] |
rs151586 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs151650 | 0.83[ASN][1000 genomes] |
rs151674 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1818439 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2117446 | 0.99[ASN][1000 genomes] |
rs239506 | 0.98[ASN][1000 genomes] |
rs239508 | 0.82[ASN][1000 genomes] |
rs239545 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs239547 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs239550 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs239551 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35626280 | 0.99[ASN][1000 genomes] |
rs4552689 | 0.84[ASN][1000 genomes] |
rs4706821 | 0.96[ASN][1000 genomes] |
rs4706822 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs60373337 | 1.00[ASN][1000 genomes] |
rs6915142 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6918121 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6939120 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9294167 | 0.98[ASN][1000 genomes] |
rs9343948 | 0.98[ASN][1000 genomes] |
rs9343950 | 0.98[ASN][1000 genomes] |
rs9343951 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9343952 | 0.83[ASN][1000 genomes] |
rs9343956 | 1.00[ASN][1000 genomes] |
rs9350836 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9352786 | 0.99[ASN][1000 genomes] |
rs9352787 | 0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9361576 | 0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9361578 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1028607 | chr6:79853272-80767716 | Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
2 | nsv1032347 | chr6:80284809-80694778 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
3 | esv3475140 | chr6:80592690-80679283 | Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
4 | esv3475142 | chr6:80592789-80679132 | Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
5 | nsv965652 | chr6:80663704-80688769 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:80676200-80678600 | Weak transcription | Primary T helper memory cells from peripheral blood 2 | blood |
2 | chr6:80676200-80679600 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
3 | chr6:80676600-80677600 | ZNF genes & repeats | Dnd41 | blood |