Variant report

Variant	rs2396552
Chromosome Location	chr7:112153368-112153369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2966473	0.86[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2966474	0.82[ASN][1000 genomes]
rs3095036	0.93[ASN][1000 genomes]
rs3111457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6942783	1.00[JPT][hapmap]
rs6960978	1.00[JPT][hapmap]
rs9641483	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2396552	DNAJB9	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112151200-112153400	Enhancers	Fetal Brain Female	brain
2	chr7:112151600-112153800	Enhancers	Fetal Muscle Leg	muscle
3	chr7:112151800-112154600	Enhancers	Fetal Brain Male	brain
4	chr7:112153000-112153800	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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