Variant report

Variant	rs2397214
Chromosome Location	chr6:56146560-56146561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56145135..56147974-chr6:56151778..56154219,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12528835	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925140	0.85[ASW][hapmap];0.85[LWK][hapmap]
rs1925157	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs1925164	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.87[MKK][hapmap];0.86[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894834	0.83[AFR][1000 genomes]
rs3857613	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4355611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902532	0.81[AFR][1000 genomes]
rs6920090	0.86[AFR][1000 genomes]
rs6923130	0.85[ASW][hapmap];0.88[LWK][hapmap]
rs7753541	0.86[AFR][1000 genomes]
rs7757732	0.85[AFR][1000 genomes]
rs7760380	0.81[LWK][hapmap]
rs7765410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769092	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9296835	0.82[YRI][hapmap]
rs9357898	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9357899	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396187	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464370	0.85[AFR][1000 genomes]
rs9475647	0.84[YRI][hapmap];0.85[AFR][1000 genomes]
rs9475649	0.82[AFR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56143600-56156200	Weak transcription	Fetal Lung	lung
2	chr6:56143800-56156200	Weak transcription	Colon Smooth Muscle	Colon

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