Variant report

Variant	rs2399518
Chromosome Location	chr2:209755090-209755091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10451578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10451581	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs13428553	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs13431649	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2364690	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2364691	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2364692	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2364694	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2886147	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2895422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35888428	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs3851938	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875758	chr2:209676037-209784089	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875759	chr2:209692190-209784089	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv460058	chr2:209755059-209866395	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv584306	chr2:209755059-209866395	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209754000-209756800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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