Variant report
Variant | rs2402820 |
---|---|
Chromosome Location | chr7:126297698-126297699 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:126296023..126300010-chr7:126305457..126308211,3 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1008905 | 0.83[CHD][hapmap] |
rs10254233 | 0.83[TSI][hapmap] |
rs10255379 | 0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
rs10279616 | 0.80[CHD][hapmap] |
rs12706739 | 0.80[CHD][hapmap] |
rs12706740 | 0.95[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs13243112 | 0.86[CHB][hapmap];0.83[ASN][1000 genomes] |
rs1361983 | 0.83[TSI][hapmap] |
rs1361985 | 0.83[TSI][hapmap] |
rs1361986 | 0.95[CEU][hapmap];0.87[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap] |
rs1419482 | 0.80[CHD][hapmap] |
rs1419496 | 0.83[TSI][hapmap] |
rs1579214 | 0.83[CHD][hapmap] |
rs1815973 | 0.83[CHD][hapmap] |
rs2237761 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2283069 | 0.83[CHD][hapmap] |
rs2299492 | 0.86[CHB][hapmap];0.89[CHD][hapmap];0.81[ASN][1000 genomes] |
rs2299493 | 0.80[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2299497 | 0.82[JPT][hapmap] |
rs2896374 | 0.82[CHD][hapmap] |
rs34261190 | 0.81[ASN][1000 genomes] |
rs3808154 | 0.86[TSI][hapmap] |
rs3824014 | 0.91[JPT][hapmap] |
rs4728051 | 0.81[JPT][hapmap] |
rs4731317 | 0.80[CHD][hapmap] |
rs4731320 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4731323 | 0.83[TSI][hapmap] |
rs6954055 | 0.92[CHB][hapmap];0.94[JPT][hapmap] |
rs6975231 | 0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap] |
rs7792723 | 0.82[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes] |
rs7795337 | 0.83[TSI][hapmap] |
rs7803165 | 0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap] |
rs7808017 | 0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
rs7810270 | 0.83[TSI][hapmap] |
rs8180790 | 0.83[ASN][1000 genomes] |
rs9691497 | 0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
5 | nsv1032108 | chr7:126278349-126362592 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
6 | nsv5939 | chr7:126279355-126322778 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:126296400-126299400 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
2 | chr7:126296800-126299200 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
3 | chr7:126297000-126298000 | Enhancers | GM12878-XiMat | blood |
4 | chr7:126297000-126301600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
5 | chr7:126297600-126299400 | Enhancers | Primary B cells from peripheral blood | blood |