Variant report

Variant	rs2402822
Chromosome Location	chr7:126297947-126297948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126296023..126300010-chr7:126305457..126308211,3	K562	blood:

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs1008907	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10234189	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10487454	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10808224	0.97[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10954120	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11486997	0.84[ASN][1000 genomes]
rs11971474	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11976897	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11981877	0.84[ASN][1000 genomes]
rs11982636	0.84[ASN][1000 genomes]
rs12154335	0.84[ASN][1000 genomes]
rs12533174	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12536122	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12538744	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12538796	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12666739	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12674181	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12706744	0.88[ASN][1000 genomes]
rs1361990	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1419476	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1419486	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1419487	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1419488	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1419489	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1419493	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1419494	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1419495	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1419497	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1419498	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1419499	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1468155	0.84[AFR][1000 genomes]
rs1468156	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1579215	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17609121	0.83[ASN][1000 genomes]
rs17610345	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17610889	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17682376	0.83[ASN][1000 genomes]
rs17682883	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17683130	0.84[ASN][1000 genomes]
rs17683331	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17683777	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1815971	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1815972	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1819776	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1858952	0.84[ASN][1000 genomes]
rs1894733	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1946110	0.85[AFR][1000 genomes]
rs1946111	0.85[AFR][1000 genomes]
rs1946112	0.84[ASN][1000 genomes]
rs2073862	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2106308	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2106309	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2106310	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2106311	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2106312	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2237743	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2237745	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2237747	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2237762	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237768	0.88[EUR][1000 genomes]
rs2299463	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2299465	0.84[ASN][1000 genomes]
rs2299466	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2299467	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2299468	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2299469	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2299470	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2299472	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2299475	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299476	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2299477	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2299478	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2299479	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2299480	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2299482	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2299483	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2299484	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2299485	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2402818	0.85[AFR][1000 genomes]
rs2896372	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2896373	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35260564	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3824024	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4141361	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4236623	0.98[ASN][1000 genomes]
rs4236624	0.98[ASN][1000 genomes]
rs4276622	0.84[AFR][1000 genomes]
rs4380862	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55832333	0.84[ASN][1000 genomes]
rs58153158	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs58436844	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59969183	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs60156642	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61068613	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62477866	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs62477870	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62477871	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62477872	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62477899	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62477900	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62477902	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62479315	0.83[ASN][1000 genomes]
rs62479317	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62479321	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62479325	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6467092	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66633311	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67698678	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6946642	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6963108	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6969693	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6974018	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs737702	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7455156	0.84[ASN][1000 genomes]
rs756900	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7779831	0.93[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7780253	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7784073	0.90[EUR][1000 genomes]
rs7790017	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7790862	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7792592	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7792700	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7804379	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7811921	0.87[AFR][1000 genomes]
rs8180772	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs886176	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9641796	0.80[ASN][1000 genomes]
rs9641797	0.82[ASN][1000 genomes]
rs9641798	0.82[ASN][1000 genomes]
rs9641799	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9641800	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9691501	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs9942592	0.83[ASN][1000 genomes]
rs9942596	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9942680	0.83[ASN][1000 genomes]
rs9942681	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv5939	chr7:126279355-126322778	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126296400-126299400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:126296800-126299200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr7:126297000-126298000	Enhancers	GM12878-XiMat	blood
4	chr7:126297000-126301600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:126297600-126299400	Enhancers	Primary B cells from peripheral blood	blood
6	chr7:126297800-126298200	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links