Variant report

Variant	rs2402848
Chromosome Location	chr7:126644787-126644788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10272799	0.88[YRI][hapmap]
rs10279547	0.88[YRI][hapmap]
rs17862254	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs17862258	0.95[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs17863175	0.85[CHB][hapmap];0.84[CHD][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17867729	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2188186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap]
rs6951546	0.95[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs929174	0.95[CHB][hapmap];0.84[CHD][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv889188	chr7:126620555-126646353	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv608379	chr7:126643692-126657545	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2402848	LOC154872	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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