Variant report
| Variant | rs2402855 |
|---|---|
| Chromosome Location | chr7:126788942-126788943 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZNF800-4 | chr7:126787075-126792049 | NONHSAT123130 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10954143 | 0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1361955 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1858784 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2040502 | 0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs2106183 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2237785 | 0.83[JPT][hapmap] |
| rs2283094 | 0.89[JPT][hapmap] |
| rs2299533 | 0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2299540 | 0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs2299542 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6950264 | 0.94[JPT][hapmap] |
| rs7808643 | 0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes] |
| rs978874 | 0.83[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1027369 | chr7:126772111-126798871 | Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
