Variant report

Variant	rs2405797
Chromosome Location	chr12:86813367-86813368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10160933	1.00[JPT][hapmap]
rs10735253	1.00[CHD][hapmap]
rs10745415	0.83[EUR][1000 genomes]
rs10776953	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10776954	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10776958	0.91[EUR][1000 genomes]
rs10776960	0.88[EUR][1000 genomes]
rs10776967	0.92[EUR][1000 genomes]
rs10776975	0.89[CEU][hapmap]
rs10776982	1.00[CHD][hapmap]
rs10858409	0.86[EUR][1000 genomes]
rs10858411	0.90[EUR][1000 genomes]
rs10858412	0.89[CEU][hapmap];0.96[TSI][hapmap]
rs10858417	0.91[EUR][1000 genomes]
rs10858420	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs10858429	0.83[EUR][1000 genomes]
rs11103946	0.94[EUR][1000 genomes]
rs12306070	1.00[JPT][hapmap]
rs12311272	1.00[JPT][hapmap]
rs12311407	1.00[JPT][hapmap]
rs12311449	1.00[JPT][hapmap]
rs1389294	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1389295	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1463749	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1493408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1493413	0.93[EUR][1000 genomes]
rs1493414	0.91[EUR][1000 genomes]
rs1493417	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1493418	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1493419	0.81[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs1493420	1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1493421	1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1532262	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1532263	0.83[EUR][1000 genomes]
rs1542780	1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1552839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1922745	0.83[EUR][1000 genomes]
rs1994863	0.80[EUR][1000 genomes]
rs2131565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2141925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2178748	0.88[CEU][hapmap];1.00[TSI][hapmap]
rs2250915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2405932	0.83[CEU][hapmap]
rs2405934	0.81[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs2406120	0.91[EUR][1000 genomes]
rs2406121	0.92[EUR][1000 genomes]
rs2406128	0.89[CEU][hapmap]
rs2406142	0.84[MEX][hapmap];0.83[EUR][1000 genomes]
rs2406156	0.81[EUR][1000 genomes]
rs2452803	0.81[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2452805	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2452806	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2452808	0.90[EUR][1000 genomes]
rs2452811	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2452815	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2465142	0.89[EUR][1000 genomes]
rs2465145	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2465148	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2465149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2471561	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2471562	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2471563	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2471564	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2471567	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs2897269	0.89[CEU][hapmap]
rs2897273	0.96[TSI][hapmap]
rs4280066	1.00[CHD][hapmap]
rs4300451	0.83[EUR][1000 genomes]
rs4309213	0.87[CHD][hapmap]
rs4329741	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4444151	0.89[CEU][hapmap]
rs4508266	1.00[CHD][hapmap]
rs4842512	0.80[EUR][1000 genomes]
rs6538040	0.89[CEU][hapmap]
rs6538043	0.82[EUR][1000 genomes]
rs6538044	0.83[EUR][1000 genomes]
rs7134045	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7134944	0.83[CEU][hapmap];1.00[TSI][hapmap]
rs7137308	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7302391	0.84[MEX][hapmap]
rs7303642	0.92[EUR][1000 genomes]
rs7309839	0.89[CEU][hapmap]
rs7316265	0.81[EUR][1000 genomes]
rs7953494	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7954833	0.83[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs7954883	0.83[EUR][1000 genomes]
rs7963957	0.86[EUR][1000 genomes]
rs7966656	0.91[EUR][1000 genomes]
rs7972185	0.83[CEU][hapmap];1.00[TSI][hapmap]
rs7975314	0.89[CEU][hapmap];1.00[TSI][hapmap]
rs839107	0.82[EUR][1000 genomes]
rs9645772	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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