Variant report

Variant	rs2405803
Chromosome Location	chr5:119635496-119635497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10053881	0.80[ASN][1000 genomes]
rs11241541	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11241544	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11953656	0.83[AMR][1000 genomes]
rs12514405	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12516817	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12521979	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12523275	0.80[ASN][1000 genomes]
rs12655926	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12655927	0.83[AMR][1000 genomes]
rs12655944	0.83[AMR][1000 genomes]
rs13171088	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13172992	0.80[ASN][1000 genomes]
rs13188486	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1422391	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17146446	0.80[ASN][1000 genomes]
rs17146450	0.80[ASN][1000 genomes]
rs35139304	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36047600	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36064957	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs36079833	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs66864061	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867625	0.80[ASN][1000 genomes]
rs6886288	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71586476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704977	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv432803	chr5:119419101-119659101	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv882786	chr5:119615110-119714817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv965575	chr5:119621540-119650309	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119633600-119639800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:119634000-119635600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:119634400-119639800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:119634600-119640000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:119635000-119639800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:119635000-119639800	Weak transcription	NHDF-Ad	bronchial
7	chr5:119635000-119640400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:119635400-119640000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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