Variant report

Variant	rs2405932
Chromosome Location	chr12:86720155-86720156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10745415	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10776954	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10776958	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10776960	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10776967	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10776975	0.83[CEU][hapmap]
rs10858409	0.86[EUR][1000 genomes]
rs10858411	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10858412	0.83[CEU][hapmap]
rs10858417	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10858420	0.88[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10858429	0.82[EUR][1000 genomes]
rs11103946	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1389292	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1389294	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1389295	0.89[EUR][1000 genomes]
rs1493413	0.93[EUR][1000 genomes]
rs1493414	0.83[CEU][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1493417	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1493418	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1532263	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1922745	0.82[EUR][1000 genomes]
rs1994863	0.87[EUR][1000 genomes]
rs2141925	0.84[CEU][hapmap]
rs2178748	0.80[CEU][hapmap]
rs2405797	0.83[CEU][hapmap]
rs2405934	0.83[CEU][hapmap]
rs2406120	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2406121	0.92[EUR][1000 genomes]
rs2406128	0.84[CEU][hapmap]
rs2406142	0.82[EUR][1000 genomes]
rs2406156	0.81[EUR][1000 genomes]
rs2452803	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2452805	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2452808	0.82[CEU][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2465142	0.89[EUR][1000 genomes]
rs2465145	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2465148	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2471567	0.89[EUR][1000 genomes]
rs2897269	0.83[CEU][hapmap]
rs4300451	0.82[EUR][1000 genomes]
rs4329741	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4444151	0.83[CEU][hapmap]
rs6538023	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs6538027	0.83[CEU][hapmap]
rs6538040	0.83[CEU][hapmap]
rs6538043	0.81[EUR][1000 genomes]
rs6538044	0.82[EUR][1000 genomes]
rs7134045	0.88[CEU][hapmap]
rs7134944	0.87[CEU][hapmap]
rs7303642	0.92[EUR][1000 genomes]
rs7309839	0.83[CEU][hapmap]
rs7312245	0.83[CEU][hapmap]
rs7316265	0.81[EUR][1000 genomes]
rs7953494	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7954833	0.87[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7954883	0.82[EUR][1000 genomes]
rs7963957	0.86[EUR][1000 genomes]
rs7966656	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7972185	0.87[CEU][hapmap]
rs7975314	0.82[CEU][hapmap]
rs839107	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1053087	chr12:86569126-86733418	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541564	chr12:86569126-86733418	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1045386	chr12:86616015-86733418	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv541565	chr12:86616015-86733418	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv802	chr12:86683758-86723684	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1845250	chr12:86696771-86730126	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1053234	chr12:86701070-86774957	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2405932	MGAT4C	cis	Heart Left Ventricle	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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