Variant report

Variant	rs2406128
Chromosome Location	chr12:86675460-86675461
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 211 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs10431399	0.84[JPT][hapmap]
rs10745407	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10745408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10776953	0.88[CEU][hapmap]
rs10776954	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10776955	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10776957	1.00[ASN][1000 genomes]
rs10776958	0.92[EUR][1000 genomes]
rs10776959	1.00[ASN][1000 genomes]
rs10776960	0.90[EUR][1000 genomes]
rs10776961	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs10776967	0.91[EUR][1000 genomes]
rs10776969	0.84[JPT][hapmap]
rs10776977	0.83[JPT][hapmap]
rs10858408	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10858409	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10858411	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs10858412	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs10858415	0.82[JPT][hapmap]
rs10858417	0.90[EUR][1000 genomes]
rs10858420	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs10858425	0.84[JPT][hapmap]
rs10858427	0.84[JPT][hapmap]
rs1097997	0.83[CEU][hapmap]
rs11103912	0.84[ASN][1000 genomes]
rs11103930	0.82[JPT][hapmap]
rs11103946	0.89[EUR][1000 genomes]
rs11830208	0.82[JPT][hapmap]
rs11830448	0.83[JPT][hapmap]
rs12303046	0.82[JPT][hapmap]
rs12317113	0.84[JPT][hapmap]
rs12319410	0.83[JPT][hapmap]
rs12319593	0.81[JPT][hapmap]
rs12578669	0.84[JPT][hapmap]
rs12581639	0.83[JPT][hapmap]
rs12582690	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs12582767	0.83[JPT][hapmap]
rs1389292	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs1389294	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1389295	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs1463750	0.84[CEU][hapmap]
rs1493408	0.89[CEU][hapmap]
rs1493413	0.93[EUR][1000 genomes]
rs1493414	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs1493415	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1493417	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1493418	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1493419	0.94[CEU][hapmap]
rs1493420	0.89[CEU][hapmap]
rs1493421	0.85[CEU][hapmap]
rs1532263	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1542780	0.85[CEU][hapmap]
rs1628799	0.83[CEU][hapmap];0.83[JPT][hapmap]
rs1689364	0.84[CEU][hapmap]
rs1698787	1.00[JPT][hapmap]
rs17013858	0.83[JPT][hapmap]
rs17013981	0.83[JPT][hapmap]
rs17014005	0.83[JPT][hapmap]
rs17014008	0.83[JPT][hapmap]
rs17014009	0.83[JPT][hapmap]
rs17014020	0.83[JPT][hapmap]
rs1922742	0.84[JPT][hapmap]
rs1922749	0.84[JPT][hapmap]
rs1948448	0.92[ASN][1000 genomes]
rs1986602	0.83[JPT][hapmap]
rs1986603	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs1994863	0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs2091818	0.83[JPT][hapmap]
rs2141925	0.89[CEU][hapmap]
rs2220782	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2250915	0.85[CEU][hapmap]
rs2405793	0.80[JPT][hapmap]
rs2405797	0.89[CEU][hapmap]
rs2405925	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2405928	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs2405929	0.83[JPT][hapmap]
rs2405930	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs2405931	0.83[JPT][hapmap]
rs2405932	0.84[CEU][hapmap]
rs2405933	0.88[ASN][1000 genomes]
rs2405934	1.00[CEU][hapmap]
rs2406115	0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs2406116	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2406117	1.00[ASN][1000 genomes]
rs2406118	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2406119	1.00[ASN][1000 genomes]
rs2406120	0.92[EUR][1000 genomes]
rs2406121	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406122	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2406123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2406127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2452803	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2452805	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2452807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2452808	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs2465142	0.93[EUR][1000 genomes]
rs2465143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2465144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2465145	0.95[EUR][1000 genomes]
rs2465147	0.92[ASN][1000 genomes]
rs2465148	0.95[EUR][1000 genomes]
rs2471560	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2471561	0.85[CEU][hapmap]
rs2471562	0.90[CEU][hapmap]
rs2471563	0.85[CEU][hapmap]
rs2471565	0.84[CEU][hapmap]
rs2471567	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2471568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2471569	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2471570	0.92[ASN][1000 genomes]
rs2897240	0.83[JPT][hapmap]
rs2897274	0.83[JPT][hapmap]
rs2897275	0.82[JPT][hapmap]
rs2897277	0.82[JPT][hapmap]
rs2897278	0.82[JPT][hapmap]
rs2897280	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4265650	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4329741	0.95[EUR][1000 genomes]
rs4334094	1.00[ASN][1000 genomes]
rs4503614	1.00[ASN][1000 genomes]
rs4526834	0.83[JPT][hapmap]
rs4628748	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs4636736	0.83[JPT][hapmap]
rs6538021	0.84[CEU][hapmap]
rs6538023	0.82[CEU][hapmap]
rs6538024	0.86[JPT][hapmap]
rs6538025	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6538027	0.89[CEU][hapmap]
rs6538029	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6538031	1.00[ASN][1000 genomes]
rs6538032	1.00[ASN][1000 genomes]
rs6538033	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs6538042	0.84[JPT][hapmap]
rs7134045	0.94[CEU][hapmap]
rs7134944	0.83[CEU][hapmap]
rs7134946	0.95[ASN][1000 genomes]
rs7135177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7135733	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7135741	0.98[ASN][1000 genomes]
rs7299319	0.89[JPT][hapmap]
rs7301129	0.83[JPT][hapmap]
rs7303642	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7303796	0.84[JPT][hapmap]
rs7310186	0.93[ASN][1000 genomes]
rs7312245	0.89[CEU][hapmap]
rs7953196	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7953494	0.95[EUR][1000 genomes]
rs7954833	0.83[CEU][hapmap];0.91[EUR][1000 genomes]
rs7957560	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7963957	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7964553	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7966656	0.92[EUR][1000 genomes]
rs7972185	0.83[CEU][hapmap]
rs7972484	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7973773	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7980126	0.82[JPT][hapmap]
rs839099	0.84[CEU][hapmap]
rs839100	0.84[CEU][hapmap]
rs839104	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs839105	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs839107	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs839109	0.84[CEU][hapmap]
rs839112	0.84[CEU][hapmap]
rs839114	0.84[CEU][hapmap]
rs839116	0.84[CEU][hapmap]
rs839117	0.84[CEU][hapmap]
rs839134	0.84[CEU][hapmap]
rs839138	0.84[CEU][hapmap]
rs839139	0.84[CEU][hapmap]
rs839147	0.84[CEU][hapmap]
rs839148	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs839149	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs839150	1.00[JPT][hapmap]
rs839151	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs839152	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs839153	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs839154	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs839156	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs839157	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs839158	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs839159	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs839162	0.83[JPT][hapmap]
rs839165	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs839166	0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs839168	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs839170	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs839171	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs839183	0.84[CEU][hapmap]
rs844433	0.84[CEU][hapmap]
rs844434	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs844435	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs844437	0.84[CEU][hapmap]
rs858213	0.84[CEU][hapmap]
rs863392	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs863394	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs863395	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs865138	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs865721	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs9919783	0.81[ASN][1000 genomes]
rs9919793	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1053087	chr12:86569126-86733418	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541564	chr12:86569126-86733418	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1045386	chr12:86616015-86733418	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv541565	chr12:86616015-86733418	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv1843214	chr12:86673989-86703959	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv1850061	chr12:86673989-86703959	ZNF genes & repeats Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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