Variant report

Variant	rs2406278
Chromosome Location	chr1:58211941-58211942
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1323827	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2224823	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2406282	1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3118054	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3118055	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3118057	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3118058	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3118063	1.00[CEU][hapmap]
rs3131736	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3131737	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3131738	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3131740	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3131742	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3131745	1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.86[EUR][1000 genomes]
rs927612	1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs978786	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58210600-58213600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:58210600-58215400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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