Variant report

Variant	rs2408364
Chromosome Location	chr13:51977205-51977206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51975361..51977473-chr13:52025671..52028281,2	MCF-7	breast:
2	chr13:51971225..51973020-chr13:51976171..51978919,2	MCF-7	breast:
3	chr13:51975029..51977679-chr13:52025338..52027408,2	K562	blood:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1970132	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2277445	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2897913	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3930275	1.00[ASW][hapmap];0.96[CEU][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4409985	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7322726	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7323366	1.00[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7325241	0.92[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7329338	0.93[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7991492	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7992256	0.95[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9526753	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526762	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9526767	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9526770	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535647	0.82[ASW][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs9535666	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535695	0.96[CEU][hapmap];0.80[CHD][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9568611	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:51946200-51988000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:51950200-51999800	Weak transcription	Brain Germinal Matrix	brain
6	chr13:51957400-51978200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr13:51957800-51978400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr13:51957800-51986600	Weak transcription	Fetal Thymus	thymus
9	chr13:51958000-51996800	Weak transcription	Thymus	Thymus
10	chr13:51958200-51990000	Weak transcription	HMEC	breast
11	chr13:51958400-51987800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:51959200-51981200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr13:51959800-51989400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:51962200-51979400	Weak transcription	HUVEC	blood vessel
15	chr13:51962200-51989600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr13:51962200-51993200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
18	chr13:51963600-51989800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr13:51963600-52003600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr13:51968200-51989800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr13:51969600-51995000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr13:51971000-51979600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr13:51971800-51986600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr13:51971800-51990000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr13:51971800-52025000	Weak transcription	Fetal Stomach	stomach
26	chr13:51972000-51977400	Weak transcription	Left Ventricle	heart
27	chr13:51972000-51977400	Weak transcription	Right Atrium	heart
28	chr13:51972000-51978000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr13:51972000-51978000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:51972000-51978000	Weak transcription	Gastric	stomach
31	chr13:51972000-51979200	Weak transcription	Brain Substantia Nigra	brain
32	chr13:51972000-51979600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr13:51972000-51980400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr13:51972000-51980600	Weak transcription	Brain Anterior Caudate	brain
35	chr13:51972000-51984400	Weak transcription	NH-A	brain
36	chr13:51972000-51985000	Weak transcription	Fetal Intestine Small	intestine
37	chr13:51972000-51986600	Weak transcription	Fetal Brain Male	brain
38	chr13:51972000-51987800	Weak transcription	Adipose Nuclei	Adipose
39	chr13:51972000-51988000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr13:51972000-51989600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr13:51972000-51989800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr13:51972000-51990000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr13:51972000-51990000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr13:51972000-51990000	Weak transcription	K562	blood
45	chr13:51972000-51990000	Weak transcription	NHEK	skin
46	chr13:51972000-51990000	Weak transcription	NHLF	lung
47	chr13:51972000-51993400	Weak transcription	Stomach Mucosa	stomach
48	chr13:51972000-51995000	Weak transcription	Placenta	Placenta
49	chr13:51972000-51995200	Weak transcription	HSMMtube	muscle
50	chr13:51972000-51996800	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links